GCA_019130175.1 - 8 region(s)

Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	72,481	95,951	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00011_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_30)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	succinate2propionate	SCFA	12,981	37,593	Succinate to propionate B. theta	PRO	75%

c00013_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	PFOR_II_pathway	SCFA	22,277	45,834	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00018_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Pyruvate2acetate-formate	SCFA	47,618	70,573	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00022_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	porA	SCFA	19,547	42,390	porA C. sporogenes	POR	80%

c00041_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_60)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Rnf_complex	E-MGC	1	17,025	Rnf complex C. sporogenes	RNF	83%

c00048_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_67)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	NADH_dehydrogenase_I	E-MGC	126,748	156,979	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00059_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_78)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	TPP_AA_metabolism	Putative	179,958	202,243

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_1); c00002_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_2); c00003_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_3); c00004_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_4); c00005_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_11); c00006_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_22); c00007_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_26); c00008_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_27); c00010_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_29); c00012_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_31); c00014_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_33); c00015_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_34); c00016_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_35); c00017_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_36); c00019_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_38); c00020_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_39); c00021_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_40); c00023_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_42); c00024_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_43); c00025_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_44); c00026_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_45); c00027_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_46); c00028_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_47); c00029_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_48); c00030_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_49); c00031_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_50); c00032_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_51); c00033_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_52); c00034_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_53); c00035_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_54); c00036_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_55); c00037_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_56); c00038_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_57); c00039_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_58); c00040_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_59); c00042_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_61); c00043_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_62); c00044_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_63); c00045_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_64); c00046_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_65); c00047_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_66); c00049_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_68); c00050_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_69); c00051_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_70); c00052_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_71); c00053_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_72); c00054_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_73); c00055_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_74); c00056_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_75); c00057_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_76); c00058_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_77); c00060_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_79); c00061_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_80); c00062_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_81); c00063_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_82); c00064_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_83); c00065_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_84); c00066_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_85); c00067_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_86); c00068_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_87); c00069_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_88); c00070_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_89); c00071_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_90); c00072_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_91); c00073_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_92); c00074_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_93); c00075_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_94); c00076_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_95); c00077_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_96); c00078_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_97); c00079_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_98); c00080_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_99); c00081_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_100); c00082_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_101); c00083_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_102); c00084_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_103); c00085_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_104); c00086_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_105); c00087_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_106); c00088_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_107); c00089_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_108); c00090_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_109); c00091_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_110); c00092_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_111); c00093_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_112); c00094_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_113); c00095_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_114); c00096_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_115); c00097_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_116); c00098_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_117); c00099_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_118); c00100_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_119); c00101_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_120); c00102_gnlPro.. (original name was: gnl|Prokka|OAKMIPFD_121)

Compact view

c00009_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 72,481 - 95,951 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00011_gnlPro.. - Region 1 - succinate2propionate

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Location: 12,981 - 37,593 nt. (total: 24,613 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00013_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 22,277 - 45,834 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00018_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 47,618 - 70,573 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00022_gnlPro.. - Region 1 - porA

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Location: 19,547 - 42,390 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00041_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,025 nt. (total: 17,025 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00048_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 126,748 - 156,979 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00059_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 179,958 - 202,243 nt. (total: 22,286 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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