GCA_019131575.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	114,230	139,464	Rnf complex C. sporogenes	RNF	83%

c00003_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	NADH_dehydrogenase_I	E-MGC	11,248	41,500	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00007_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	PFOR_II_pathway	SCFA	44,071	67,628	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00008_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism	Putative	74,116	100,197

c00010_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Fumarate2succinate	SCFA	61,165	84,635	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00023_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Pyruvate2acetate-formate,GR_fatty_acids	Putative	179,307	213,019	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00034_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_34)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	porA	SCFA	23,371	46,214	porA C. sporogenes	POR	80%
Region 34.2	succinate2propionate	SCFA	120,581	145,289	Succinate to propionate B. theta	PRO	75%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_2); c00004_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_4); c00005_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_5); c00006_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_6); c00009_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_9); c00011_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_11); c00012_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_12); c00013_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_13); c00014_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_14); c00015_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_15); c00016_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_16); c00017_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_17); c00018_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_18); c00019_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_19); c00020_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_20); c00021_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_21); c00022_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_22); c00024_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_24); c00025_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_25); c00026_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_26); c00027_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_27); c00028_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_28); c00029_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_29); c00030_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_30); c00031_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_31); c00032_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_32); c00033_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_33); c00035_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_35); c00036_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_36); c00037_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_37); c00038_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_38); c00039_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_39); c00040_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_40); c00041_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_41); c00042_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_42); c00043_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_43); c00044_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_44); c00045_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_45); c00046_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_46); c00047_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_47); c00048_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_48); c00049_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_49); c00050_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_50); c00051_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_51); c00052_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_52); c00053_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_53); c00054_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_54); c00055_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_55); c00056_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_56); c00057_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_57); c00058_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_58); c00059_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_59); c00060_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_60); c00061_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_61); c00062_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_67); c00063_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_78); c00064_gnlPro.. (original name was: gnl|Prokka|AICKCFPO_83)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex

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Location: 114,230 - 139,464 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00003_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 11,248 - 41,500 nt. (total: 30,253 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00007_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 44,071 - 67,628 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00008_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 74,116 - 100,197 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00010_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 61,165 - 84,635 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00023_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 179,307 - 213,019 nt. (total: 33,713 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))

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c00034_gnlPro.. - Region 1 - porA

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Location: 23,371 - 46,214 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00034_gnlPro.. - Region 2 - succinate2propionate

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Location: 120,581 - 145,289 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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