GCA_019132105.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	NADH_dehydrogenase_I	E-MGC	34,470	64,465	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00003_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	porA	SCFA	77,370	100,016	porA C. sporogenes	POR	60%

c00005_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	58,389	83,716	Rnf complex C. sporogenes	RNF	83%

c00013_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_62)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Fumarate2succinate	SCFA	29,974	53,389	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00023_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_72)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	succinate2propionate	SCFA	95,047	121,974	Succinate to propionate A. sp. KLE1797	SUC	57%

c00052_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_101)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	TPP_AA_metabolism	Putative	148,102	176,433

c00060_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_109)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	OD_fatty_acids	Putative	64,032	88,831

c00072_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_127)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	Pyruvate2acetate-formate	SCFA	103,004	126,053	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_2); c00004_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_17); c00006_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_28); c00007_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_32); c00008_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_37); c00009_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_44); c00010_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_53); c00011_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_59); c00012_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_61); c00014_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_63); c00015_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_64); c00016_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_65); c00017_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_66); c00018_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_67); c00019_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_68); c00020_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_69); c00021_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_70); c00022_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_71); c00024_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_73); c00025_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_74); c00026_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_75); c00027_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_76); c00028_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_77); c00029_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_78); c00030_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_79); c00031_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_80); c00032_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_81); c00033_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_82); c00034_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_83); c00035_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_84); c00036_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_85); c00037_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_86); c00038_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_87); c00039_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_88); c00040_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_89); c00041_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_90); c00042_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_91); c00043_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_92); c00044_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_93); c00045_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_94); c00046_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_95); c00047_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_96); c00048_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_97); c00049_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_98); c00050_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_99); c00051_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_100); c00053_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_102); c00054_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_103); c00055_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_104); c00056_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_105); c00057_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_106); c00058_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_107); c00059_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_108); c00061_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_110); c00062_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_111); c00063_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_112); c00064_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_113); c00065_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_114); c00066_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_115); c00067_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_116); c00068_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_117); c00069_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_118); c00070_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_119); c00071_gnlPro.. (original name was: gnl|Prokka|EPDNJPGK_120)

Compact view

c00001_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 34,470 - 64,465 nt. (total: 29,996 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

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regulatory genes

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c00003_gnlPro.. - Region 1 - porA

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Location: 77,370 - 100,016 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00005_gnlPro.. - Region 1 - Rnf_complex

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Location: 58,389 - 83,716 nt. (total: 25,328 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00013_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 29,974 - 53,389 nt. (total: 23,416 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00023_gnlPro.. - Region 1 - succinate2propionate

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Location: 95,047 - 121,974 nt. (total: 26,928 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00052_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 148,102 - 176,433 nt. (total: 28,332 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00060_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 64,032 - 88,831 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00072_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 103,004 - 126,053 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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