GCA_019132675.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	porA	SCFA	103,350	126,194	porA C. sporogenes	POR	80%

c00005_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	100,533	125,735	Rnf complex C. sporogenes	RNF	83%

c00006_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	PFOR_II_pathway	SCFA	45,679	69,236	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00012_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_58)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	NADH_dehydrogenase_I	E-MGC	108,343	138,479	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00020_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Fumarate2succinate	SCFA	37,838	61,308	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00034_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_80)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	TPP_AA_metabolism	Putative	172,062	198,143

c00042_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_88)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	Pyruvate2acetate-formate	SCFA	8,144	21,729	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00045_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_91)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	succinate2propionate	SCFA	42,670	67,378	Succinate to propionate B. theta	PRO	75%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_1); c00003_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_13); c00004_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_24); c00007_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_53); c00008_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_54); c00009_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_55); c00010_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_56); c00011_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_57); c00013_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_59); c00014_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_60); c00015_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_61); c00016_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_62); c00017_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_63); c00018_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_64); c00019_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_65); c00021_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_67); c00022_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_68); c00023_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_69); c00024_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_70); c00025_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_71); c00026_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_72); c00027_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_73); c00028_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_74); c00029_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_75); c00030_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_76); c00031_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_77); c00032_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_78); c00033_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_79); c00035_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_81); c00036_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_82); c00037_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_83); c00038_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_84); c00039_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_85); c00040_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_86); c00041_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_87); c00043_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_89); c00044_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_90); c00046_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_92); c00047_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_93); c00048_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_94); c00049_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_95); c00050_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_96); c00051_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_97); c00052_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_98); c00053_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_99); c00054_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_100); c00055_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_101); c00056_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_102); c00057_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_103); c00058_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_104); c00059_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_105); c00060_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_106); c00061_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_107); c00062_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_108); c00063_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_109); c00064_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_110); c00065_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_111); c00066_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_112); c00067_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_113); c00068_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_114); c00069_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_115); c00070_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_116); c00071_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_117); c00072_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_118); c00073_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_119); c00074_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_120); c00075_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_121); c00076_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_122); c00077_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_123); c00078_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_124); c00079_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_125); c00080_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_126); c00081_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_127); c00082_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_128); c00083_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_129); c00084_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_130); c00085_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_131); c00086_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_132); c00087_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_133); c00088_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_134); c00089_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_135); c00090_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_136); c00091_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_137); c00092_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_138); c00093_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_139); c00094_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_140); c00095_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_141); c00096_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_142); c00097_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_143); c00098_gnlPro.. (original name was: gnl|Prokka|LBCKCIMO_144)

Compact view

c00002_gnlPro.. - Region 1 - porA

Download region GenBank file

Location: 103,350 - 126,194 nt. (total: 22,845 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00005_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 100,533 - 125,735 nt. (total: 25,203 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_gnlPro.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 45,679 - 69,236 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00012_gnlPro.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 108,343 - 138,479 nt. (total: 30,137 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00020_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 37,838 - 61,308 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00034_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 172,062 - 198,143 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00042_gnlPro.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 8,144 - 21,729 nt. (total: 13,586 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00045_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 42,670 - 67,378 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters