GCA_019132735.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEMMPFHMM_12 (original name was: gnl|Prokka|EMMPFHMM_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	terpene	158,116	179,834

gnlProkkaEMMPFHMM_34 (original name was: gnl|Prokka|EMMPFHMM_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NRPS	81,851	128,015
Region 34.2	hydrogen-cyanide	299,980	313,216

Region	Type	From	To	Similarity
Region 12.1	terpene	158,116	179,834
Region 34.1	NRPS	81,851	128,015
Region 34.2	hydrogen-cyanide	299,980	313,216

No secondary metabolite regions were found in these records:: gnlProkkaEMMPFHMM_1 (original name was: gnl|Prokka|EMMPFHMM_1); gnlProkkaEMMPFHMM_2 (original name was: gnl|Prokka|EMMPFHMM_2); gnlProkkaEMMPFHMM_3 (original name was: gnl|Prokka|EMMPFHMM_3); gnlProkkaEMMPFHMM_4 (original name was: gnl|Prokka|EMMPFHMM_4); gnlProkkaEMMPFHMM_5 (original name was: gnl|Prokka|EMMPFHMM_5); gnlProkkaEMMPFHMM_6 (original name was: gnl|Prokka|EMMPFHMM_6); gnlProkkaEMMPFHMM_7 (original name was: gnl|Prokka|EMMPFHMM_7); gnlProkkaEMMPFHMM_8 (original name was: gnl|Prokka|EMMPFHMM_8); gnlProkkaEMMPFHMM_9 (original name was: gnl|Prokka|EMMPFHMM_9); gnlProkkaEMMPFHMM_10 (original name was: gnl|Prokka|EMMPFHMM_10); gnlProkkaEMMPFHMM_11 (original name was: gnl|Prokka|EMMPFHMM_11); gnlProkkaEMMPFHMM_13 (original name was: gnl|Prokka|EMMPFHMM_13); gnlProkkaEMMPFHMM_14 (original name was: gnl|Prokka|EMMPFHMM_14); gnlProkkaEMMPFHMM_15 (original name was: gnl|Prokka|EMMPFHMM_15); gnlProkkaEMMPFHMM_16 (original name was: gnl|Prokka|EMMPFHMM_16); gnlProkkaEMMPFHMM_17 (original name was: gnl|Prokka|EMMPFHMM_17); gnlProkkaEMMPFHMM_18 (original name was: gnl|Prokka|EMMPFHMM_18); gnlProkkaEMMPFHMM_19 (original name was: gnl|Prokka|EMMPFHMM_19); gnlProkkaEMMPFHMM_20 (original name was: gnl|Prokka|EMMPFHMM_20); gnlProkkaEMMPFHMM_21 (original name was: gnl|Prokka|EMMPFHMM_21); gnlProkkaEMMPFHMM_22 (original name was: gnl|Prokka|EMMPFHMM_22); gnlProkkaEMMPFHMM_23 (original name was: gnl|Prokka|EMMPFHMM_23); gnlProkkaEMMPFHMM_24 (original name was: gnl|Prokka|EMMPFHMM_24); gnlProkkaEMMPFHMM_25 (original name was: gnl|Prokka|EMMPFHMM_25); gnlProkkaEMMPFHMM_26 (original name was: gnl|Prokka|EMMPFHMM_26); gnlProkkaEMMPFHMM_27 (original name was: gnl|Prokka|EMMPFHMM_27); gnlProkkaEMMPFHMM_28 (original name was: gnl|Prokka|EMMPFHMM_28); gnlProkkaEMMPFHMM_29 (original name was: gnl|Prokka|EMMPFHMM_29); gnlProkkaEMMPFHMM_30 (original name was: gnl|Prokka|EMMPFHMM_30); gnlProkkaEMMPFHMM_31 (original name was: gnl|Prokka|EMMPFHMM_31); gnlProkkaEMMPFHMM_32 (original name was: gnl|Prokka|EMMPFHMM_32); gnlProkkaEMMPFHMM_33 (original name was: gnl|Prokka|EMMPFHMM_33); gnlProkkaEMMPFHMM_35 (original name was: gnl|Prokka|EMMPFHMM_35); gnlProkkaEMMPFHMM_36 (original name was: gnl|Prokka|EMMPFHMM_36); gnlProkkaEMMPFHMM_37 (original name was: gnl|Prokka|EMMPFHMM_37); gnlProkkaEMMPFHMM_38 (original name was: gnl|Prokka|EMMPFHMM_38); gnlProkkaEMMPFHMM_39 (original name was: gnl|Prokka|EMMPFHMM_39); gnlProkkaEMMPFHMM_40 (original name was: gnl|Prokka|EMMPFHMM_40); gnlProkkaEMMPFHMM_41 (original name was: gnl|Prokka|EMMPFHMM_41); gnlProkkaEMMPFHMM_42 (original name was: gnl|Prokka|EMMPFHMM_42); gnlProkkaEMMPFHMM_45 (original name was: gnl|Prokka|EMMPFHMM_45); gnlProkkaEMMPFHMM_56 (original name was: gnl|Prokka|EMMPFHMM_56); gnlProkkaEMMPFHMM_67 (original name was: gnl|Prokka|EMMPFHMM_67); gnlProkkaEMMPFHMM_76 (original name was: gnl|Prokka|EMMPFHMM_76); gnlProkkaEMMPFHMM_79 (original name was: gnl|Prokka|EMMPFHMM_79)

Compact view

gnlProkkaEMMPFHMM_12 - Region 1 - terpene

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Location: 158,116 - 179,834 nt. (total: 21,719 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEMMPFHMM_34 - Region 1 - NRPS

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Location: 81,851 - 128,015 nt. (total: 46,165 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 81850 - 128015:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg34_122

AMP-binding (8..447): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DYFGSGSLIK
Nearest Stachelhaus code(s):: Ala DMGGFGCLIK (50% 8Å match); Leu DYFTFGLIIK (41% 8Å match); Hpr DYQYCGHLIK (32% 8Å match)
Stachelhaus code match:: 60% (weak)

AMP-binding (1210..1629): X

nrpys: Tyr, bOH-Tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Polar aromatic ring (Tyr, bOH-Tyr)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMTNMGEVAK
Nearest Stachelhaus code(s):: Asn DMTKVGEVGK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaEMMPFHMM_34 - Region 2 - hydrogen-cyanide

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Location: 299,980 - 313,216 nt. (total: 13,237 nt) Show pHMM detection rules used

hydrogen-cyanide: (Fer2_4 and cds(Pyr_redox_2 and Fer2_BFD) and DAO)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.