GCA_019391315.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaIMFCPDME_3 (original name was: gnl|Prokka|IMFCPDME_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	24,910	66,076

gnlProkkaIMFCPDME_15 (original name was: gnl|Prokka|IMFCPDME_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	RiPP-like	98,926	118,277

gnlProkkaIMFCPDME_56 (original name was: gnl|Prokka|IMFCPDME_56)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	RiPP-like	1	8,389	quinolidomicin A	Polyketide	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	T3PKS	24,910	66,076
Region 15.1	RiPP-like	98,926	118,277
Region 29.1	RiPP-like	1	8,389	quinolidomicin A	Polyketide	3%

No secondary metabolite regions were found in these records:: gnlProkkaIMFCPDME_1 (original name was: gnl|Prokka|IMFCPDME_1); gnlProkkaIMFCPDME_2 (original name was: gnl|Prokka|IMFCPDME_2); gnlProkkaIMFCPDME_4 (original name was: gnl|Prokka|IMFCPDME_4); gnlProkkaIMFCPDME_5 (original name was: gnl|Prokka|IMFCPDME_5); gnlProkkaIMFCPDME_6 (original name was: gnl|Prokka|IMFCPDME_6); gnlProkkaIMFCPDME_7 (original name was: gnl|Prokka|IMFCPDME_7); gnlProkkaIMFCPDME_8 (original name was: gnl|Prokka|IMFCPDME_8); gnlProkkaIMFCPDME_9 (original name was: gnl|Prokka|IMFCPDME_9); gnlProkkaIMFCPDME_10 (original name was: gnl|Prokka|IMFCPDME_10); gnlProkkaIMFCPDME_11 (original name was: gnl|Prokka|IMFCPDME_11); gnlProkkaIMFCPDME_12 (original name was: gnl|Prokka|IMFCPDME_12); gnlProkkaIMFCPDME_13 (original name was: gnl|Prokka|IMFCPDME_13); gnlProkkaIMFCPDME_14 (original name was: gnl|Prokka|IMFCPDME_14); gnlProkkaIMFCPDME_16 (original name was: gnl|Prokka|IMFCPDME_16); gnlProkkaIMFCPDME_17 (original name was: gnl|Prokka|IMFCPDME_17); gnlProkkaIMFCPDME_18 (original name was: gnl|Prokka|IMFCPDME_18); gnlProkkaIMFCPDME_19 (original name was: gnl|Prokka|IMFCPDME_19); gnlProkkaIMFCPDME_20 (original name was: gnl|Prokka|IMFCPDME_20); gnlProkkaIMFCPDME_21 (original name was: gnl|Prokka|IMFCPDME_21); gnlProkkaIMFCPDME_23 (original name was: gnl|Prokka|IMFCPDME_23); gnlProkkaIMFCPDME_24 (original name was: gnl|Prokka|IMFCPDME_24); gnlProkkaIMFCPDME_25 (original name was: gnl|Prokka|IMFCPDME_25); gnlProkkaIMFCPDME_26 (original name was: gnl|Prokka|IMFCPDME_26); gnlProkkaIMFCPDME_27 (original name was: gnl|Prokka|IMFCPDME_27); gnlProkkaIMFCPDME_34 (original name was: gnl|Prokka|IMFCPDME_34); gnlProkkaIMFCPDME_45 (original name was: gnl|Prokka|IMFCPDME_45); gnlProkkaIMFCPDME_67 (original name was: gnl|Prokka|IMFCPDME_67); gnlProkkaIMFCPDME_77 (original name was: gnl|Prokka|IMFCPDME_77); gnlProkkaIMFCPDME_78 (original name was: gnl|Prokka|IMFCPDME_78)

Compact view

gnlProkkaIMFCPDME_3 - Region 1 - T3PKS

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Location: 24,910 - 66,076 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIMFCPDME_15 - Region 1 - RiPP-like

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Location: 98,926 - 118,277 nt. (total: 19,352 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIMFCPDME_56 - Region 1 - RiPP-like

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Location: 1 - 8,389 nt. (total: 8,389 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1