GCA_019449715.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaALGMGLFE_4 (original name was: gnl|Prokka|ALGMGLFE_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	5,490	26,674

gnlProkkaALGMGLFE_14 (original name was: gnl|Prokka|ALGMGLFE_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RaS-RiPP	10,985	28,944

gnlProkkaALGMGLFE_18 (original name was: gnl|Prokka|ALGMGLFE_18)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RaS-RiPP	1	17,081	streptide	RiPP	100%

gnlProkkaALGMGLFE_20 (original name was: gnl|Prokka|ALGMGLFE_20)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RiPP-like	208,560	214,587

gnlProkkaALGMGLFE_21 (original name was: gnl|Prokka|ALGMGLFE_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RiPP-like	1	14,181

gnlProkkaALGMGLFE_37 (original name was: gnl|Prokka|ALGMGLFE_37)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS-like	1	37,996	asukamycin	Polyketide:Type II polyketide	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RRE-containing	5,490	26,674
Region 14.1	RaS-RiPP	10,985	28,944
Region 18.1	RaS-RiPP	1	17,081	streptide	RiPP	100%
Region 20.1	RiPP-like	208,560	214,587
Region 21.1	RiPP-like	1	14,181
Region 37.1	NRPS-like	1	37,996	asukamycin	Polyketide:Type II polyketide	4%

No secondary metabolite regions were found in these records:: gnlProkkaALGMGLFE_1 (original name was: gnl|Prokka|ALGMGLFE_1); gnlProkkaALGMGLFE_2 (original name was: gnl|Prokka|ALGMGLFE_2); gnlProkkaALGMGLFE_3 (original name was: gnl|Prokka|ALGMGLFE_3); gnlProkkaALGMGLFE_5 (original name was: gnl|Prokka|ALGMGLFE_5); gnlProkkaALGMGLFE_6 (original name was: gnl|Prokka|ALGMGLFE_6); gnlProkkaALGMGLFE_7 (original name was: gnl|Prokka|ALGMGLFE_7); gnlProkkaALGMGLFE_8 (original name was: gnl|Prokka|ALGMGLFE_8); gnlProkkaALGMGLFE_9 (original name was: gnl|Prokka|ALGMGLFE_9); gnlProkkaALGMGLFE_10 (original name was: gnl|Prokka|ALGMGLFE_10); gnlProkkaALGMGLFE_11 (original name was: gnl|Prokka|ALGMGLFE_11); gnlProkkaALGMGLFE_12 (original name was: gnl|Prokka|ALGMGLFE_12); gnlProkkaALGMGLFE_13 (original name was: gnl|Prokka|ALGMGLFE_13); gnlProkkaALGMGLFE_15 (original name was: gnl|Prokka|ALGMGLFE_15); gnlProkkaALGMGLFE_16 (original name was: gnl|Prokka|ALGMGLFE_16); gnlProkkaALGMGLFE_17 (original name was: gnl|Prokka|ALGMGLFE_17); gnlProkkaALGMGLFE_19 (original name was: gnl|Prokka|ALGMGLFE_19); gnlProkkaALGMGLFE_22 (original name was: gnl|Prokka|ALGMGLFE_22); gnlProkkaALGMGLFE_23 (original name was: gnl|Prokka|ALGMGLFE_23); gnlProkkaALGMGLFE_24 (original name was: gnl|Prokka|ALGMGLFE_24); gnlProkkaALGMGLFE_25 (original name was: gnl|Prokka|ALGMGLFE_25); gnlProkkaALGMGLFE_26 (original name was: gnl|Prokka|ALGMGLFE_26); gnlProkkaALGMGLFE_27 (original name was: gnl|Prokka|ALGMGLFE_27); gnlProkkaALGMGLFE_28 (original name was: gnl|Prokka|ALGMGLFE_28); gnlProkkaALGMGLFE_29 (original name was: gnl|Prokka|ALGMGLFE_29); gnlProkkaALGMGLFE_30 (original name was: gnl|Prokka|ALGMGLFE_30); gnlProkkaALGMGLFE_31 (original name was: gnl|Prokka|ALGMGLFE_31); gnlProkkaALGMGLFE_32 (original name was: gnl|Prokka|ALGMGLFE_32); gnlProkkaALGMGLFE_33 (original name was: gnl|Prokka|ALGMGLFE_33); gnlProkkaALGMGLFE_34 (original name was: gnl|Prokka|ALGMGLFE_34); gnlProkkaALGMGLFE_35 (original name was: gnl|Prokka|ALGMGLFE_35); gnlProkkaALGMGLFE_36 (original name was: gnl|Prokka|ALGMGLFE_36); gnlProkkaALGMGLFE_38 (original name was: gnl|Prokka|ALGMGLFE_38); gnlProkkaALGMGLFE_39 (original name was: gnl|Prokka|ALGMGLFE_39); gnlProkkaALGMGLFE_40 (original name was: gnl|Prokka|ALGMGLFE_40); gnlProkkaALGMGLFE_41 (original name was: gnl|Prokka|ALGMGLFE_41)

Compact view

gnlProkkaALGMGLFE_4 - Region 1 - RRE-containing

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Location: 5,490 - 26,674 nt. (total: 21,185 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaALGMGLFE_14 - Region 1 - RaS-RiPP

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Location: 10,985 - 28,944 nt. (total: 17,960 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaALGMGLFE_18 - Region 1 - RaS-RiPP

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Location: 1 - 17,081 nt. (total: 17,081 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaALGMGLFE_20 - Region 1 - RiPP-like

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Location: 208,560 - 214,587 nt. (total: 6,028 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaALGMGLFE_21 - Region 1 - RiPP-like

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Location: 1 - 14,181 nt. (total: 14,181 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaALGMGLFE_37 - Region 1 - NRPS-like

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Location: 1 - 37,996 nt. (total: 37,996 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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resistance

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg37_24

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)