GCA_019449735.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGHCBJNHB_2 (original name was: gnl|Prokka|GHCBJNHB_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	lanthipeptide-class-i	49,042	80,674

gnlProkkaGHCBJNHB_3 (original name was: gnl|Prokka|GHCBJNHB_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS-like	115,068	157,959	asukamycin	Polyketide:Type II polyketide	4%

gnlProkkaGHCBJNHB_6 (original name was: gnl|Prokka|GHCBJNHB_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RRE-containing	348	21,271

gnlProkkaGHCBJNHB_13 (original name was: gnl|Prokka|GHCBJNHB_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RaS-RiPP	132,208	150,173

gnlProkkaGHCBJNHB_15 (original name was: gnl|Prokka|GHCBJNHB_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	RaS-RiPP	1	17,082	streptide	RiPP	100%

gnlProkkaGHCBJNHB_16 (original name was: gnl|Prokka|GHCBJNHB_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RiPP-like	206,212	225,143

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	lanthipeptide-class-i	49,042	80,674
Region 3.1	NRPS-like	115,068	157,959	asukamycin	Polyketide:Type II polyketide	4%
Region 6.1	RRE-containing	348	21,271
Region 13.1	RaS-RiPP	132,208	150,173
Region 15.1	RaS-RiPP	1	17,082	streptide	RiPP	100%
Region 16.1	RiPP-like	206,212	225,143

No secondary metabolite regions were found in these records:: gnlProkkaGHCBJNHB_1 (original name was: gnl|Prokka|GHCBJNHB_1); gnlProkkaGHCBJNHB_4 (original name was: gnl|Prokka|GHCBJNHB_4); gnlProkkaGHCBJNHB_5 (original name was: gnl|Prokka|GHCBJNHB_5); gnlProkkaGHCBJNHB_7 (original name was: gnl|Prokka|GHCBJNHB_7); gnlProkkaGHCBJNHB_8 (original name was: gnl|Prokka|GHCBJNHB_8); gnlProkkaGHCBJNHB_9 (original name was: gnl|Prokka|GHCBJNHB_9); gnlProkkaGHCBJNHB_10 (original name was: gnl|Prokka|GHCBJNHB_10); gnlProkkaGHCBJNHB_11 (original name was: gnl|Prokka|GHCBJNHB_11); gnlProkkaGHCBJNHB_12 (original name was: gnl|Prokka|GHCBJNHB_12); gnlProkkaGHCBJNHB_14 (original name was: gnl|Prokka|GHCBJNHB_14); gnlProkkaGHCBJNHB_17 (original name was: gnl|Prokka|GHCBJNHB_17); gnlProkkaGHCBJNHB_18 (original name was: gnl|Prokka|GHCBJNHB_18); gnlProkkaGHCBJNHB_19 (original name was: gnl|Prokka|GHCBJNHB_19); gnlProkkaGHCBJNHB_20 (original name was: gnl|Prokka|GHCBJNHB_20); gnlProkkaGHCBJNHB_21 (original name was: gnl|Prokka|GHCBJNHB_21); gnlProkkaGHCBJNHB_22 (original name was: gnl|Prokka|GHCBJNHB_22)

Compact view

gnlProkkaGHCBJNHB_2 - Region 1 - lanthipeptide-class-i

Download region GenBank file

Download region SVG

Location: 49,042 - 80,674 nt. (total: 31,633 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaGHCBJNHB_3 - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 115,068 - 157,959 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg3_157

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaGHCBJNHB_6 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 348 - 21,271 nt. (total: 20,924 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGHCBJNHB_13 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 132,208 - 150,173 nt. (total: 17,966 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGHCBJNHB_15 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 1 - 17,082 nt. (total: 17,082 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGHCBJNHB_16 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 206,212 - 225,143 nt. (total: 18,932 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.