GCA_019641415.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAPCACNPM_1 (original name was: gnl|Prokka|APCACNPM_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	106,798	118,948

gnlProkkaAPCACNPM_10 (original name was: gnl|Prokka|APCACNPM_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T3PKS	518,678	559,847

gnlProkkaAPCACNPM_11 (original name was: gnl|Prokka|APCACNPM_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	26,198	47,079

gnlProkkaAPCACNPM_14 (original name was: gnl|Prokka|APCACNPM_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	cyclic-lactone-autoinducer	196,089	216,794

Region	Type	From	To	Similarity
Region 1.1	RiPP-like	106,798	118,948
Region 10.1	T3PKS	518,678	559,847
Region 11.1	terpene	26,198	47,079
Region 14.1	cyclic-lactone-autoinducer	196,089	216,794

No secondary metabolite regions were found in these records:: gnlProkkaAPCACNPM_2 (original name was: gnl|Prokka|APCACNPM_2); gnlProkkaAPCACNPM_3 (original name was: gnl|Prokka|APCACNPM_3); gnlProkkaAPCACNPM_4 (original name was: gnl|Prokka|APCACNPM_4); gnlProkkaAPCACNPM_5 (original name was: gnl|Prokka|APCACNPM_5); gnlProkkaAPCACNPM_6 (original name was: gnl|Prokka|APCACNPM_6); gnlProkkaAPCACNPM_7 (original name was: gnl|Prokka|APCACNPM_7); gnlProkkaAPCACNPM_8 (original name was: gnl|Prokka|APCACNPM_8); gnlProkkaAPCACNPM_9 (original name was: gnl|Prokka|APCACNPM_9); gnlProkkaAPCACNPM_12 (original name was: gnl|Prokka|APCACNPM_12); gnlProkkaAPCACNPM_13 (original name was: gnl|Prokka|APCACNPM_13); gnlProkkaAPCACNPM_15 (original name was: gnl|Prokka|APCACNPM_15); gnlProkkaAPCACNPM_16 (original name was: gnl|Prokka|APCACNPM_16); gnlProkkaAPCACNPM_17 (original name was: gnl|Prokka|APCACNPM_17)

Compact view

gnlProkkaAPCACNPM_1 - Region 1 - RiPP-like

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Location: 106,798 - 118,948 nt. (total: 12,151 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAPCACNPM_10 - Region 1 - T3PKS

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Location: 518,678 - 559,847 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAPCACNPM_11 - Region 1 - terpene

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Location: 26,198 - 47,079 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAPCACNPM_14 - Region 1 - cyclic-lactone-autoinducer

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Location: 196,089 - 216,794 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.