GCA_020076005.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAOKEDNFC_7 (original name was: gnl|Prokka|AOKEDNFC_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RaS-RiPP	33,123	51,078

gnlProkkaAOKEDNFC_12 (original name was: gnl|Prokka|AOKEDNFC_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RRE-containing	154,352	175,129

gnlProkkaAOKEDNFC_25 (original name was: gnl|Prokka|AOKEDNFC_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RaS-RiPP	16,945	33,687	streptide	RiPP	100%

gnlProkkaAOKEDNFC_40 (original name was: gnl|Prokka|AOKEDNFC_40)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	51,872	70,801

gnlProkkaAOKEDNFC_50 (original name was: gnl|Prokka|AOKEDNFC_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	RaS-RiPP	42,236	64,527

gnlProkkaAOKEDNFC_55 (original name was: gnl|Prokka|AOKEDNFC_55)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	lanthipeptide-class-iv	1	13,506

gnlProkkaAOKEDNFC_58 (original name was: gnl|Prokka|AOKEDNFC_58)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS-like	1	26,507	asukamycin	Polyketide:Type II polyketide	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 7.1	RaS-RiPP	33,123	51,078
Region 11.1	RRE-containing	154,352	175,129
Region 13.1	RaS-RiPP	16,945	33,687	streptide	RiPP	100%
Region 22.1	RiPP-like	51,872	70,801
Region 32.1	RaS-RiPP	42,236	64,527
Region 35.1	lanthipeptide-class-iv	1	13,506
Region 37.1	NRPS-like	1	26,507	asukamycin	Polyketide:Type II polyketide	4%

No secondary metabolite regions were found in these records:: gnlProkkaAOKEDNFC_1 (original name was: gnl|Prokka|AOKEDNFC_1); gnlProkkaAOKEDNFC_2 (original name was: gnl|Prokka|AOKEDNFC_2); gnlProkkaAOKEDNFC_3 (original name was: gnl|Prokka|AOKEDNFC_3); gnlProkkaAOKEDNFC_4 (original name was: gnl|Prokka|AOKEDNFC_4); gnlProkkaAOKEDNFC_5 (original name was: gnl|Prokka|AOKEDNFC_5); gnlProkkaAOKEDNFC_6 (original name was: gnl|Prokka|AOKEDNFC_6); gnlProkkaAOKEDNFC_9 (original name was: gnl|Prokka|AOKEDNFC_9); gnlProkkaAOKEDNFC_10 (original name was: gnl|Prokka|AOKEDNFC_10); gnlProkkaAOKEDNFC_11 (original name was: gnl|Prokka|AOKEDNFC_11); gnlProkkaAOKEDNFC_15 (original name was: gnl|Prokka|AOKEDNFC_15); gnlProkkaAOKEDNFC_32 (original name was: gnl|Prokka|AOKEDNFC_32); gnlProkkaAOKEDNFC_33 (original name was: gnl|Prokka|AOKEDNFC_33); gnlProkkaAOKEDNFC_34 (original name was: gnl|Prokka|AOKEDNFC_34); gnlProkkaAOKEDNFC_35 (original name was: gnl|Prokka|AOKEDNFC_35); gnlProkkaAOKEDNFC_36 (original name was: gnl|Prokka|AOKEDNFC_36); gnlProkkaAOKEDNFC_37 (original name was: gnl|Prokka|AOKEDNFC_37); gnlProkkaAOKEDNFC_38 (original name was: gnl|Prokka|AOKEDNFC_38); gnlProkkaAOKEDNFC_39 (original name was: gnl|Prokka|AOKEDNFC_39); gnlProkkaAOKEDNFC_41 (original name was: gnl|Prokka|AOKEDNFC_41); gnlProkkaAOKEDNFC_42 (original name was: gnl|Prokka|AOKEDNFC_42); gnlProkkaAOKEDNFC_43 (original name was: gnl|Prokka|AOKEDNFC_43); gnlProkkaAOKEDNFC_44 (original name was: gnl|Prokka|AOKEDNFC_44); gnlProkkaAOKEDNFC_45 (original name was: gnl|Prokka|AOKEDNFC_45); gnlProkkaAOKEDNFC_46 (original name was: gnl|Prokka|AOKEDNFC_46); gnlProkkaAOKEDNFC_47 (original name was: gnl|Prokka|AOKEDNFC_47); gnlProkkaAOKEDNFC_48 (original name was: gnl|Prokka|AOKEDNFC_48); gnlProkkaAOKEDNFC_49 (original name was: gnl|Prokka|AOKEDNFC_49); gnlProkkaAOKEDNFC_51 (original name was: gnl|Prokka|AOKEDNFC_51); gnlProkkaAOKEDNFC_54 (original name was: gnl|Prokka|AOKEDNFC_54); gnlProkkaAOKEDNFC_57 (original name was: gnl|Prokka|AOKEDNFC_57); gnlProkkaAOKEDNFC_59 (original name was: gnl|Prokka|AOKEDNFC_59); gnlProkkaAOKEDNFC_61 (original name was: gnl|Prokka|AOKEDNFC_61)

Compact view

gnlProkkaAOKEDNFC_7 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 33,123 - 51,078 nt. (total: 17,956 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_12 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 154,352 - 175,129 nt. (total: 20,778 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_25 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 16,945 - 33,687 nt. (total: 16,743 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaAOKEDNFC_40 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 51,872 - 70,801 nt. (total: 18,930 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_50 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 42,236 - 64,527 nt. (total: 22,292 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_55 - Region 1 - lanthipeptide-class-iv

Download region GenBank file

Download region SVG

Location: 1 - 13,506 nt. (total: 13,506 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaAOKEDNFC_58 - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 1 - 26,507 nt. (total: 26,507 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg37_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)