GCA_020076005.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAOKEDNFC_7 (original name was: gnl|Prokka|AOKEDNFC_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RaS-RiPP	33,123	51,078

gnlProkkaAOKEDNFC_12 (original name was: gnl|Prokka|AOKEDNFC_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RRE-containing	154,352	175,129

gnlProkkaAOKEDNFC_25 (original name was: gnl|Prokka|AOKEDNFC_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RaS-RiPP	16,945	33,687	streptide	RiPP	100%

gnlProkkaAOKEDNFC_40 (original name was: gnl|Prokka|AOKEDNFC_40)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	51,872	70,801

gnlProkkaAOKEDNFC_50 (original name was: gnl|Prokka|AOKEDNFC_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	RaS-RiPP	42,236	64,527

gnlProkkaAOKEDNFC_55 (original name was: gnl|Prokka|AOKEDNFC_55)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	lanthipeptide-class-iv	1	13,506

gnlProkkaAOKEDNFC_58 (original name was: gnl|Prokka|AOKEDNFC_58)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS-like	1	26,507	asukamycin	Polyketide:Type II polyketide	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 7.1	RaS-RiPP	33,123	51,078
Region 11.1	RRE-containing	154,352	175,129
Region 13.1	RaS-RiPP	16,945	33,687	streptide	RiPP	100%
Region 22.1	RiPP-like	51,872	70,801
Region 32.1	RaS-RiPP	42,236	64,527
Region 35.1	lanthipeptide-class-iv	1	13,506
Region 37.1	NRPS-like	1	26,507	asukamycin	Polyketide:Type II polyketide	4%

Compact view

gnlProkkaAOKEDNFC_7 - Region 1 - RaS-RiPP

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Location: 33,123 - 51,078 nt. (total: 17,956 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_12 - Region 1 - RRE-containing

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Location: 154,352 - 175,129 nt. (total: 20,778 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_25 - Region 1 - RaS-RiPP

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Location: 16,945 - 33,687 nt. (total: 16,743 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaAOKEDNFC_40 - Region 1 - RiPP-like

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Location: 51,872 - 70,801 nt. (total: 18,930 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_50 - Region 1 - RaS-RiPP

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Location: 42,236 - 64,527 nt. (total: 22,292 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAOKEDNFC_55 - Region 1 - lanthipeptide-class-iv

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Location: 1 - 13,506 nt. (total: 13,506 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

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core biosynthetic genes

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transport-related genes

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resistance

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaAOKEDNFC_58 - Region 1 - NRPS-like

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Location: 1 - 26,507 nt. (total: 26,507 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg37_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)