GCA_020076065.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPNNIAJOG_3 (original name was: gnl|Prokka|PNNIAJOG_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RRE-containing	29,123	50,247

gnlProkkaPNNIAJOG_5 (original name was: gnl|Prokka|PNNIAJOG_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RaS-RiPP	28,724	46,816

gnlProkkaPNNIAJOG_14 (original name was: gnl|Prokka|PNNIAJOG_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RaS-RiPP	1	17,346	streptide	RiPP	100%

gnlProkkaPNNIAJOG_21 (original name was: gnl|Prokka|PNNIAJOG_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	lanthipeptide-class-iv	3,214	16,720

gnlProkkaPNNIAJOG_33 (original name was: gnl|Prokka|PNNIAJOG_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	33,339	52,286

gnlProkkaPNNIAJOG_36 (original name was: gnl|Prokka|PNNIAJOG_36)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	NRPS-like	1	6,708

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	RRE-containing	29,123	50,247
Region 5.1	RaS-RiPP	28,724	46,816
Region 14.1	RaS-RiPP	1	17,346	streptide	RiPP	100%
Region 21.1	lanthipeptide-class-iv	3,214	16,720
Region 33.1	RiPP-like	33,339	52,286
Region 36.1	NRPS-like	1	6,708

No secondary metabolite regions were found in these records:: gnlProkkaPNNIAJOG_1 (original name was: gnl|Prokka|PNNIAJOG_1); gnlProkkaPNNIAJOG_2 (original name was: gnl|Prokka|PNNIAJOG_2); gnlProkkaPNNIAJOG_4 (original name was: gnl|Prokka|PNNIAJOG_4); gnlProkkaPNNIAJOG_6 (original name was: gnl|Prokka|PNNIAJOG_6); gnlProkkaPNNIAJOG_7 (original name was: gnl|Prokka|PNNIAJOG_7); gnlProkkaPNNIAJOG_8 (original name was: gnl|Prokka|PNNIAJOG_8); gnlProkkaPNNIAJOG_9 (original name was: gnl|Prokka|PNNIAJOG_9); gnlProkkaPNNIAJOG_10 (original name was: gnl|Prokka|PNNIAJOG_10); gnlProkkaPNNIAJOG_11 (original name was: gnl|Prokka|PNNIAJOG_11); gnlProkkaPNNIAJOG_12 (original name was: gnl|Prokka|PNNIAJOG_12); gnlProkkaPNNIAJOG_13 (original name was: gnl|Prokka|PNNIAJOG_13); gnlProkkaPNNIAJOG_15 (original name was: gnl|Prokka|PNNIAJOG_15); gnlProkkaPNNIAJOG_16 (original name was: gnl|Prokka|PNNIAJOG_16); gnlProkkaPNNIAJOG_17 (original name was: gnl|Prokka|PNNIAJOG_17); gnlProkkaPNNIAJOG_18 (original name was: gnl|Prokka|PNNIAJOG_18); gnlProkkaPNNIAJOG_19 (original name was: gnl|Prokka|PNNIAJOG_19); gnlProkkaPNNIAJOG_20 (original name was: gnl|Prokka|PNNIAJOG_20); gnlProkkaPNNIAJOG_22 (original name was: gnl|Prokka|PNNIAJOG_22); gnlProkkaPNNIAJOG_23 (original name was: gnl|Prokka|PNNIAJOG_23); gnlProkkaPNNIAJOG_24 (original name was: gnl|Prokka|PNNIAJOG_24); gnlProkkaPNNIAJOG_25 (original name was: gnl|Prokka|PNNIAJOG_25); gnlProkkaPNNIAJOG_26 (original name was: gnl|Prokka|PNNIAJOG_26); gnlProkkaPNNIAJOG_27 (original name was: gnl|Prokka|PNNIAJOG_27); gnlProkkaPNNIAJOG_28 (original name was: gnl|Prokka|PNNIAJOG_28); gnlProkkaPNNIAJOG_29 (original name was: gnl|Prokka|PNNIAJOG_29); gnlProkkaPNNIAJOG_30 (original name was: gnl|Prokka|PNNIAJOG_30); gnlProkkaPNNIAJOG_31 (original name was: gnl|Prokka|PNNIAJOG_31); gnlProkkaPNNIAJOG_32 (original name was: gnl|Prokka|PNNIAJOG_32); gnlProkkaPNNIAJOG_34 (original name was: gnl|Prokka|PNNIAJOG_34); gnlProkkaPNNIAJOG_35 (original name was: gnl|Prokka|PNNIAJOG_35); gnlProkkaPNNIAJOG_37 (original name was: gnl|Prokka|PNNIAJOG_37); gnlProkkaPNNIAJOG_38 (original name was: gnl|Prokka|PNNIAJOG_38); gnlProkkaPNNIAJOG_39 (original name was: gnl|Prokka|PNNIAJOG_39); gnlProkkaPNNIAJOG_40 (original name was: gnl|Prokka|PNNIAJOG_40); gnlProkkaPNNIAJOG_41 (original name was: gnl|Prokka|PNNIAJOG_41); gnlProkkaPNNIAJOG_42 (original name was: gnl|Prokka|PNNIAJOG_42); gnlProkkaPNNIAJOG_43 (original name was: gnl|Prokka|PNNIAJOG_43); gnlProkkaPNNIAJOG_44 (original name was: gnl|Prokka|PNNIAJOG_44); gnlProkkaPNNIAJOG_45 (original name was: gnl|Prokka|PNNIAJOG_45); gnlProkkaPNNIAJOG_46 (original name was: gnl|Prokka|PNNIAJOG_46); gnlProkkaPNNIAJOG_47 (original name was: gnl|Prokka|PNNIAJOG_47); gnlProkkaPNNIAJOG_51 (original name was: gnl|Prokka|PNNIAJOG_51); gnlProkkaPNNIAJOG_55 (original name was: gnl|Prokka|PNNIAJOG_55); gnlProkkaPNNIAJOG_61 (original name was: gnl|Prokka|PNNIAJOG_61); gnlProkkaPNNIAJOG_67 (original name was: gnl|Prokka|PNNIAJOG_67); gnlProkkaPNNIAJOG_68 (original name was: gnl|Prokka|PNNIAJOG_68)

Compact view

gnlProkkaPNNIAJOG_3 - Region 1 - RRE-containing

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Location: 29,123 - 50,247 nt. (total: 21,125 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPNNIAJOG_5 - Region 1 - RaS-RiPP

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Location: 28,724 - 46,816 nt. (total: 18,093 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPNNIAJOG_14 - Region 1 - RaS-RiPP

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Location: 1 - 17,346 nt. (total: 17,346 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaPNNIAJOG_21 - Region 1 - lanthipeptide-class-iv

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Location: 3,214 - 16,720 nt. (total: 13,507 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaPNNIAJOG_33 - Region 1 - RiPP-like

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Location: 33,339 - 52,286 nt. (total: 18,948 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPNNIAJOG_36 - Region 1 - NRPS-like

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Location: 1 - 6,708 nt. (total: 6,708 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg36_2

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)