GCA_020076365.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEPOOICEK_8 (original name was: gnl|Prokka|EPOOICEK_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RaS-RiPP	1	18,093

gnlProkkaEPOOICEK_23 (original name was: gnl|Prokka|EPOOICEK_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	51,855	70,802

gnlProkkaEPOOICEK_65 (original name was: gnl|Prokka|EPOOICEK_65)

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	NRPS-like	1	6,708

gnlProkkaEPOOICEK_80 (original name was: gnl|Prokka|EPOOICEK_80)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	RRE-containing	4,932	26,056

Region	Type	From	To	Similarity
Region 2.1	RaS-RiPP	1	18,093
Region 11.1	RiPP-like	51,855	70,802
Region 48.1	NRPS-like	1	6,708
Region 62.1	RRE-containing	4,932	26,056

No secondary metabolite regions were found in these records:: gnlProkkaEPOOICEK_4 (original name was: gnl|Prokka|EPOOICEK_4); gnlProkkaEPOOICEK_11 (original name was: gnl|Prokka|EPOOICEK_11); gnlProkkaEPOOICEK_12 (original name was: gnl|Prokka|EPOOICEK_12); gnlProkkaEPOOICEK_15 (original name was: gnl|Prokka|EPOOICEK_15); gnlProkkaEPOOICEK_17 (original name was: gnl|Prokka|EPOOICEK_17); gnlProkkaEPOOICEK_19 (original name was: gnl|Prokka|EPOOICEK_19); gnlProkkaEPOOICEK_20 (original name was: gnl|Prokka|EPOOICEK_20); gnlProkkaEPOOICEK_21 (original name was: gnl|Prokka|EPOOICEK_21); gnlProkkaEPOOICEK_22 (original name was: gnl|Prokka|EPOOICEK_22); gnlProkkaEPOOICEK_24 (original name was: gnl|Prokka|EPOOICEK_24); gnlProkkaEPOOICEK_28 (original name was: gnl|Prokka|EPOOICEK_28); gnlProkkaEPOOICEK_29 (original name was: gnl|Prokka|EPOOICEK_29); gnlProkkaEPOOICEK_31 (original name was: gnl|Prokka|EPOOICEK_31); gnlProkkaEPOOICEK_32 (original name was: gnl|Prokka|EPOOICEK_32); gnlProkkaEPOOICEK_34 (original name was: gnl|Prokka|EPOOICEK_34); gnlProkkaEPOOICEK_35 (original name was: gnl|Prokka|EPOOICEK_35); gnlProkkaEPOOICEK_36 (original name was: gnl|Prokka|EPOOICEK_36); gnlProkkaEPOOICEK_37 (original name was: gnl|Prokka|EPOOICEK_37); gnlProkkaEPOOICEK_38 (original name was: gnl|Prokka|EPOOICEK_38); gnlProkkaEPOOICEK_39 (original name was: gnl|Prokka|EPOOICEK_39); gnlProkkaEPOOICEK_40 (original name was: gnl|Prokka|EPOOICEK_40); gnlProkkaEPOOICEK_41 (original name was: gnl|Prokka|EPOOICEK_41); gnlProkkaEPOOICEK_42 (original name was: gnl|Prokka|EPOOICEK_42); gnlProkkaEPOOICEK_43 (original name was: gnl|Prokka|EPOOICEK_43); gnlProkkaEPOOICEK_44 (original name was: gnl|Prokka|EPOOICEK_44); gnlProkkaEPOOICEK_45 (original name was: gnl|Prokka|EPOOICEK_45); gnlProkkaEPOOICEK_46 (original name was: gnl|Prokka|EPOOICEK_46); gnlProkkaEPOOICEK_47 (original name was: gnl|Prokka|EPOOICEK_47); gnlProkkaEPOOICEK_48 (original name was: gnl|Prokka|EPOOICEK_48); gnlProkkaEPOOICEK_49 (original name was: gnl|Prokka|EPOOICEK_49); gnlProkkaEPOOICEK_50 (original name was: gnl|Prokka|EPOOICEK_50); gnlProkkaEPOOICEK_51 (original name was: gnl|Prokka|EPOOICEK_51); gnlProkkaEPOOICEK_52 (original name was: gnl|Prokka|EPOOICEK_52); gnlProkkaEPOOICEK_53 (original name was: gnl|Prokka|EPOOICEK_53); gnlProkkaEPOOICEK_54 (original name was: gnl|Prokka|EPOOICEK_54); gnlProkkaEPOOICEK_55 (original name was: gnl|Prokka|EPOOICEK_55); gnlProkkaEPOOICEK_56 (original name was: gnl|Prokka|EPOOICEK_56); gnlProkkaEPOOICEK_57 (original name was: gnl|Prokka|EPOOICEK_57); gnlProkkaEPOOICEK_58 (original name was: gnl|Prokka|EPOOICEK_58); gnlProkkaEPOOICEK_59 (original name was: gnl|Prokka|EPOOICEK_59); gnlProkkaEPOOICEK_60 (original name was: gnl|Prokka|EPOOICEK_60); gnlProkkaEPOOICEK_61 (original name was: gnl|Prokka|EPOOICEK_61); gnlProkkaEPOOICEK_62 (original name was: gnl|Prokka|EPOOICEK_62); gnlProkkaEPOOICEK_63 (original name was: gnl|Prokka|EPOOICEK_63); gnlProkkaEPOOICEK_64 (original name was: gnl|Prokka|EPOOICEK_64); gnlProkkaEPOOICEK_66 (original name was: gnl|Prokka|EPOOICEK_66); gnlProkkaEPOOICEK_67 (original name was: gnl|Prokka|EPOOICEK_67); gnlProkkaEPOOICEK_68 (original name was: gnl|Prokka|EPOOICEK_68); gnlProkkaEPOOICEK_69 (original name was: gnl|Prokka|EPOOICEK_69); gnlProkkaEPOOICEK_70 (original name was: gnl|Prokka|EPOOICEK_70); gnlProkkaEPOOICEK_71 (original name was: gnl|Prokka|EPOOICEK_71); gnlProkkaEPOOICEK_72 (original name was: gnl|Prokka|EPOOICEK_72); gnlProkkaEPOOICEK_73 (original name was: gnl|Prokka|EPOOICEK_73); gnlProkkaEPOOICEK_74 (original name was: gnl|Prokka|EPOOICEK_74); gnlProkkaEPOOICEK_75 (original name was: gnl|Prokka|EPOOICEK_75); gnlProkkaEPOOICEK_76 (original name was: gnl|Prokka|EPOOICEK_76); gnlProkkaEPOOICEK_77 (original name was: gnl|Prokka|EPOOICEK_77); gnlProkkaEPOOICEK_78 (original name was: gnl|Prokka|EPOOICEK_78); gnlProkkaEPOOICEK_86 (original name was: gnl|Prokka|EPOOICEK_86); gnlProkkaEPOOICEK_92 (original name was: gnl|Prokka|EPOOICEK_92); gnlProkkaEPOOICEK_97 (original name was: gnl|Prokka|EPOOICEK_97)

Compact view

gnlProkkaEPOOICEK_8 - Region 1 - RaS-RiPP

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Location: 1 - 18,093 nt. (total: 18,093 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEPOOICEK_23 - Region 1 - RiPP-like

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Location: 51,855 - 70,802 nt. (total: 18,948 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEPOOICEK_65 - Region 1 - NRPS-like

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Location: 1 - 6,708 nt. (total: 6,708 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg48_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaEPOOICEK_80 - Region 1 - RRE-containing

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Location: 4,932 - 26,056 nt. (total: 21,125 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.