GCA_020313325.1 - 9 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	155,590	172,063	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00004_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	3,491	21,047	Rnf complex C. sporogenes	RNF	83%

c00020_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	GR_fatty_acids,Pyruvate2acetate-formate	SCFA	1	17,150	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00066_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	PFOR_II_pathway	SCFA	1	9,697	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00092_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_92)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	TPP_AA_metabolism	Putative	1	6,482

c00146_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_146)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 146.1	TPP_fatty_acids	Putative	21,215	46,077

c00170_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_174)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 170.1	NADH_dehydrogenase_I	E-MGC	15,288	43,656	NADH dehydrogenase I Bacteroides sp.	NADHD	61%

c00177_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_181)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 177.1	succinate2propionate	SCFA	23,209	41,162	Succinate to propionate B. theta	PRO	75%

c00220_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_224)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 220.1	porA	SCFA	1	13,233	porA C. sporogenes	POR	60%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_2); c00003_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_3); c00005_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_5); c00006_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_6); c00007_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_7); c00008_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_8); c00009_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_9); c00010_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_10); c00011_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_11); c00012_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_12); c00013_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_13); c00014_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_14); c00015_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_15); c00016_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_16); c00017_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_17); c00018_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_18); c00019_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_19); c00021_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_21); c00022_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_22); c00023_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_23); c00024_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_24); c00025_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_25); c00026_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_26); c00027_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_27); c00028_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_28); c00029_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_29); c00030_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_30); c00031_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_31); c00032_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_32); c00033_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_33); c00034_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_34); c00035_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_35); c00036_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_36); c00037_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_37); c00038_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_38); c00039_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_39); c00040_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_40); c00041_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_41); c00042_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_42); c00043_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_43); c00044_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_44); c00045_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_45); c00046_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_46); c00047_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_47); c00048_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_48); c00049_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_49); c00050_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_50); c00051_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_51); c00052_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_52); c00053_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_53); c00054_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_54); c00055_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_55); c00056_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_56); c00057_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_57); c00058_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_58); c00059_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_59); c00060_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_60); c00061_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_61); c00062_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_62); c00063_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_63); c00064_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_64); c00065_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_65); c00067_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_67); c00068_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_68); c00069_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_69); c00070_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_70); c00071_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_71); c00072_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_72); c00073_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_73); c00074_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_74); c00075_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_75); c00076_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_76); c00077_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_77); c00078_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_78); c00079_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_79); c00080_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_80); c00081_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_81); c00082_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_82); c00083_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_83); c00084_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_84); c00085_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_85); c00086_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_86); c00087_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_87); c00088_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_88); c00089_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_89); c00090_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_90); c00091_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_91); c00093_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_93); c00094_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_94); c00095_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_95); c00096_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_96); c00097_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_97); c00098_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_98); c00099_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_99); c00100_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_100); c00101_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_101); c00102_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_102); c00103_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_103); c00104_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_104); c00105_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_105); c00106_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_106); c00107_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_107); c00108_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_108); c00109_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_109); c00110_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_110); c00111_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_111); c00112_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_112); c00113_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_113); c00114_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_114); c00115_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_115); c00116_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_116); c00117_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_117); c00118_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_118); c00119_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_119); c00120_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_120); c00121_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_121); c00122_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_122); c00123_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_123); c00124_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_124); c00125_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_125); c00126_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_126); c00127_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_127); c00128_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_128); c00129_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_129); c00130_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_130); c00131_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_131); c00132_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_132); c00133_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_133); c00134_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_134); c00135_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_135); c00136_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_136); c00137_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_137); c00138_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_138); c00139_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_139); c00140_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_140); c00141_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_141); c00142_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_142); c00143_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_143); c00144_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_144); c00145_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_145); c00147_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_147); c00148_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_152); c00149_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_153); c00150_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_154); c00151_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_155); c00152_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_156); c00153_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_157); c00154_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_158); c00155_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_159); c00156_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_160); c00157_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_161); c00158_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_162); c00159_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_163); c00160_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_164); c00161_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_165); c00162_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_166); c00163_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_167); c00164_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_168); c00165_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_169); c00166_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_170); c00167_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_171); c00168_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_172); c00169_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_173); c00171_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_175); c00172_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_176); c00173_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_177); c00174_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_178); c00175_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_179); c00176_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_180); c00178_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_182); c00179_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_183); c00180_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_184); c00181_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_185); c00182_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_186); c00183_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_187); c00184_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_188); c00185_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_189); c00186_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_190); c00187_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_191); c00188_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_192); c00189_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_193); c00190_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_194); c00191_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_195); c00192_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_196); c00193_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_197); c00194_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_198); c00195_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_199); c00196_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_200); c00197_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_201); c00198_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_202); c00199_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_203); c00200_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_204); c00201_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_205); c00202_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_206); c00203_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_207); c00204_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_208); c00205_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_209); c00206_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_210); c00207_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_211); c00208_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_212); c00209_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_213); c00210_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_214); c00211_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_215); c00212_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_216); c00213_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_217); c00214_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_218); c00215_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_219); c00216_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_220); c00217_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_221); c00218_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_222); c00219_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_223); c00221_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_225); c00222_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_226); c00223_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_227); c00224_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_228); c00225_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_229); c00226_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_230); c00227_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_231); c00228_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_232); c00229_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_233); c00230_gnlPro.. (original name was: gnl|Prokka|PCAPDKKN_234)

Compact view

c00001_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 155,590 - 172,063 nt. (total: 16,474 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 1 - Rnf_complex

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Location: 3,491 - 21,047 nt. (total: 17,557 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00020_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 1 - 17,150 nt. (total: 17,150 nt) Show pHMM detection rules used

Region on contig edge.

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00066_gnlPro.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 1 - 9,697 nt. (total: 9,697 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00092_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 6,482 nt. (total: 6,482 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00146_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 21,215 - 46,077 nt. (total: 24,863 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00170_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 15,288 - 43,656 nt. (total: 28,369 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00177_gnlPro.. - Region 1 - succinate2propionate

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Location: 23,209 - 41,162 nt. (total: 17,954 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

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c00220_gnlPro.. - Region 1 - porA

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Location: 1 - 13,233 nt. (total: 13,233 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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