Select genomic region:
Overview
1.1
7.1
9.1
12.1

### Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaOGGFDOBN_1 (original name was: gnl|Prokka|OGGFDOBN_1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 113,094 | 154,260 |

gnlProkkaOGGFDOBN_7 (original name was: gnl|Prokka|OGGFDOBN_7)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | RiPP-like | 31,171 | 41,404 |

gnlProkkaOGGFDOBN_9 (original name was: gnl|Prokka|OGGFDOBN_9)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | lanthipeptide-class-ii | 1 | 19,038 | thermophilin 1277 | RiPP:Lanthipeptide | 15%

gnlProkkaOGGFDOBN_12 (original name was: gnl|Prokka|OGGFDOBN_12)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | RiPP-like | 130,420 | 142,516 | quinolidomicin A | Polyketide | 3%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 113,094 | 154,260 |
Region 7.1 | RiPP-like | 31,171 | 41,404 |
Region 9.1 | lanthipeptide-class-ii | 1 | 19,038 | thermophilin 1277 | RiPP:Lanthipeptide | 15%
Region 12.1 | RiPP-like | 130,420 | 142,516 | quinolidomicin A | Polyketide | 3%

No secondary metabolite regions were found in these records:
  gnlProkkaOGGFDOBN_2 (original name was: gnl|Prokka|OGGFDOBN_2)
  gnlProkkaOGGFDOBN_3 (original name was: gnl|Prokka|OGGFDOBN_3)
  gnlProkkaOGGFDOBN_4 (original name was: gnl|Prokka|OGGFDOBN_4)
  gnlProkkaOGGFDOBN_5 (original name was: gnl|Prokka|OGGFDOBN_5)
  gnlProkkaOGGFDOBN_6 (original name was: gnl|Prokka|OGGFDOBN_6)
  gnlProkkaOGGFDOBN_8 (original name was: gnl|Prokka|OGGFDOBN_8)
  gnlProkkaOGGFDOBN_10 (original name was: gnl|Prokka|OGGFDOBN_10)
  gnlProkkaOGGFDOBN_11 (original name was: gnl|Prokka|OGGFDOBN_11)
  gnlProkkaOGGFDOBN_13 (original name was: gnl|Prokka|OGGFDOBN_13)
  gnlProkkaOGGFDOBN_14 (original name was: gnl|Prokka|OGGFDOBN_14)
  gnlProkkaOGGFDOBN_15 (original name was: gnl|Prokka|OGGFDOBN_15)
  gnlProkkaOGGFDOBN_16 (original name was: gnl|Prokka|OGGFDOBN_16)
  gnlProkkaOGGFDOBN_17 (original name was: gnl|Prokka|OGGFDOBN_17)
  gnlProkkaOGGFDOBN_18 (original name was: gnl|Prokka|OGGFDOBN_18)
  gnlProkkaOGGFDOBN_19 (original name was: gnl|Prokka|OGGFDOBN_19)
  gnlProkkaOGGFDOBN_20 (original name was: gnl|Prokka|OGGFDOBN_20)
  gnlProkkaOGGFDOBN_21 (original name was: gnl|Prokka|OGGFDOBN_21)
  gnlProkkaOGGFDOBN_22 (original name was: gnl|Prokka|OGGFDOBN_22)
  gnlProkkaOGGFDOBN_23 (original name was: gnl|Prokka|OGGFDOBN_23)
  gnlProkkaOGGFDOBN_24 (original name was: gnl|Prokka|OGGFDOBN_24)
  gnlProkkaOGGFDOBN_25 (original name was: gnl|Prokka|OGGFDOBN_25)
  gnlProkkaOGGFDOBN_26 (original name was: gnl|Prokka|OGGFDOBN_26)
  gnlProkkaOGGFDOBN_27 (original name was: gnl|Prokka|OGGFDOBN_27)
  gnlProkkaOGGFDOBN_28 (original name was: gnl|Prokka|OGGFDOBN_28)
  gnlProkkaOGGFDOBN_29 (original name was: gnl|Prokka|OGGFDOBN_29)
  gnlProkkaOGGFDOBN_30 (original name was: gnl|Prokka|OGGFDOBN_30)
  gnlProkkaOGGFDOBN_31 (original name was: gnl|Prokka|OGGFDOBN_31)
  gnlProkkaOGGFDOBN_32 (original name was: gnl|Prokka|OGGFDOBN_32)
  gnlProkkaOGGFDOBN_33 (original name was: gnl|Prokka|OGGFDOBN_33)
  gnlProkkaOGGFDOBN_34 (original name was: gnl|Prokka|OGGFDOBN_34)
  gnlProkkaOGGFDOBN_35 (original name was: gnl|Prokka|OGGFDOBN_35)
  gnlProkkaOGGFDOBN_36 (original name was: gnl|Prokka|OGGFDOBN_36)
  gnlProkkaOGGFDOBN_40 (original name was: gnl|Prokka|OGGFDOBN_40)
  gnlProkkaOGGFDOBN_49 (original name was: gnl|Prokka|OGGFDOBN_49)
  gnlProkkaOGGFDOBN_51 (original name was: gnl|Prokka|OGGFDOBN_51)
  gnlProkkaOGGFDOBN_52 (original name was: gnl|Prokka|OGGFDOBN_52)
  gnlProkkaOGGFDOBN_53 (original name was: gnl|Prokka|OGGFDOBN_53)

Compact view
gnlProkkaOGGFDOBN_1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 113,094 - 154,260 nt. (total: 41,167 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
NRPS/PKS domains
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A domain glossary is available here, and an explanation of the visualisation is available here.
Selected features only
Show module domains
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

gnlProkkaOGGFDOBN_7 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 31,171 - 41,404 nt. (total: 10,234 nt) Show pHMM detection rules used
Region on contig edge.
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

gnlProkkaOGGFDOBN_9 - Region 1 - lanthipeptide-class-ii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 19,038 nt. (total: 19,038 nt) Show pHMM detection rules used
Region on contig edge.
lanthipeptide-class-ii: cds(LANC_like and DUF4135)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Lanthipeptides
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptide predictions
Shows the possible core peptides for each biosynthetic enzyme.
Includes CompaRiPPson results for any available databases, with a detailed explanation here.

#### Lanthipeptide(s) for ctg9_8

ctg9_3
Leader:
MKQDNFEIDSLDYEINSQELNGKSAA
Core:
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
Core with dehydrations:
G W Dha Dhb A V R L Dhb V Q G R Cys G W W F Dhb H Dha Y E Cys Dhb Dha P N V R Cys G

#### MIBiG 3.1 matches for ctg9_3

25.0% BGC0002110 (QKV49893.1): Lanthipeptide: birimositide
12
G R C G W W F T H S Y E C T S P N
28
G G W T + E C P N
13
G N N G G W C T L T K E C-Q P N
28

#### antiSMASH-DB 4.0 matches for ctg9_3

100.0% NZ_CP040803.1 and 1 other:
NZ_CP090008.1 Lanthipeptides: LV497_RS10140_lanthipeptide
Lanthipeptides: FHI56_RS00850_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
96.9% NZ_CP031248.1: Lanthipeptides: DV130_RS02025_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
1
G W Y T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
93.8% NZ_CGZJ01000010.1 and 13 others:
NZ_CP028436.1 Lanthipeptides: DA395_RS05860_lanthipeptide NZ_CP113267.1 Lanthipeptides: OTB22_RS04710_lanthipeptide NZ_CRIA01000002.1 Lanthipeptides: AKS83_RS03040_lanthipeptide NZ_FHPK02000016.1 Lanthipeptides: AZ518_RS08955_lanthipeptide NZ_FNJT01000001.1 Lanthipeptides: BLS46_RS03540_lanthipeptide NZ_FZCI01000021.1 Lanthipeptides: CFV25_RS09695_lanthipeptide NZ_JALDWE010000003.1 Lanthipeptides: M1F86_RS04900_lanthipeptide NZ_JFJA01000026.1 Lanthipeptides: BM49_RS09505_lanthipeptide NZ_JUQX01000059.1 Lanthipeptides: ADI74_RS08855_lanthipeptide NZ_LR699783.1 Lanthipeptides: F1569_RS03105_lanthipeptide NZ_NANQ01000004.1 Lanthipeptides: B5K28_RS02500_lanthipeptide NZ_NANU01000009.1 Lanthipeptides: B5K23_RS03045_lanthipeptide NZ_NCUW01000030.1 Lanthipeptides: B7709_RS09410_lanthipeptide
Lanthipeptides: AQF97_RS08525_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V R L T V Q G R C G W W F T+S Y E C T S P N V R C G
1
G W R T A V R L T V Q G R C G W W F T Y S Y E C T S P N V R C G
32
with 33 more sequence matches
81.2% NZ_AP023392.1 and 4 others:
NZ_CP015557.1 Lanthipeptides: A6M16_RS04830_lanthipeptide NZ_CP065430.1 Lanthipeptides: I5V48_RS05980_lanthipeptide NZ_CP100430.1 Lanthipeptides: NLY76_RS04570_lanthipeptide NZ_JAEUXF010000003.1 Lanthipeptides: JNE40_RS02515_lanthipeptide
Lanthipeptides: H7679_RS04985_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G+ T A V R+T Q G R C G W F T S Y E C T S P N V R C G
1
G F R T A V R M T S Q G R C G W A F T F S Y E C T S P N V R C G
32
75.0% NZ_CP028436.1 and 12 others:
NZ_CP031248.1 Lanthipeptides: DV130_RS02035_lanthipeptide NZ_CP113267.1 Lanthipeptides: OTB22_RS04700_lanthipeptide NZ_FHPK02000016.1 Lanthipeptides: AZ518_RS08965_lanthipeptide NZ_FNJT01000001.1 Lanthipeptides: BLS46_RS03550_lanthipeptide NZ_FZCI01000021.1 Lanthipeptides: CFV25_RS09685_lanthipeptide NZ_JALDWE010000003.1 Lanthipeptides: M1F86_RS04910_lanthipeptide NZ_JFJA01000026.1 Lanthipeptides: BM49_RS09500_lanthipeptide NZ_JUQX01000059.1 Lanthipeptides: ADI74_RS08845_lanthipeptide NZ_LR699783.1 Lanthipeptides: F1569_RS03115_lanthipeptide NZ_NANQ01000004.1 Lanthipeptides: B5K28_RS02510_lanthipeptide NZ_NANU01000009.1 Lanthipeptides: B5K23_RS03055_lanthipeptide NZ_NCUW01000030.1 Lanthipeptides: B7709_RS09420_lanthipeptide
Lanthipeptides: DA395_RS05850_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V+L T+ G R C G W F T S Y E C T S N V+C G
1
G W F T A V Q L T L A G R C G R W F T G S Y E C T S N N V K C G
32
71.9% NZ_CP040803.1 and 1 other:
NZ_CP090008.1 Lanthipeptides: LV497_RS10150_lanthipeptide
Lanthipeptides: FHI56_RS00860_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V+L T+ G R C G W F T S Y E C T+ N V+C G
1
G W F T A V Q L T L A G R C G R W F T G S Y E C T T N N V K C G
32
68.8% NZ_CGZJ01000010.1 and 15 others:
NZ_CP028436.1 Lanthipeptides: DA395_RS05845_lanthipeptide NZ_CP031248.1 Lanthipeptides: DV130_RS02040_lanthipeptide NZ_CP040803.1 Lanthipeptides: FHI56_RS00865_lanthipeptide NZ_CP090008.1 Lanthipeptides: LV497_RS10155_lanthipeptide NZ_CP113267.1 Lanthipeptides: OTB22_RS04695_lanthipeptide NZ_CRIA01000002.1 Lanthipeptides: AKS83_RS03025_lanthipeptide NZ_FHPK02000016.1 Lanthipeptides: AZ518_RS08970_lanthipeptide NZ_FNJT01000001.1 Lanthipeptides: BLS46_RS03555_lanthipeptide NZ_FZCI01000021.1 Lanthipeptides: CFV25_RS09680_lanthipeptide NZ_JALDWE010000003.1 Lanthipeptides: M1F86_RS04915_lanthipeptide NZ_JUQX01000059.1 Lanthipeptides: ADI74_RS08840_lanthipeptide NZ_LR699783.1 Lanthipeptides: F1569_RS03120_lanthipeptide NZ_NANQ01000004.1 Lanthipeptides: B5K28_RS02515_lanthipeptide NZ_NANU01000009.1 Lanthipeptides: B5K23_RS03060_lanthipeptide NZ_NCUW01000030.1 Lanthipeptides: B7709_RS09425_lanthipeptide
Lanthipeptides: AQF97_RS08510_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V+L T+ G R C G W F T S+E C T+ N V+C G
1
G W F T A V Q L T L A G R C G R W F T G S F E C T T N N V K C G
32
68.8% NZ_CP006910.1: Lanthipeptides: W903_RS05325_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A++L T G R C G W F T S Y E C+S N V+C G
1
G W F T A I Q L T A A G R C G R W F T G S Y E C S S N N V K C G
32
68.8% NZ_GL732493.1: Lanthipeptides: HMPREF0851_RS0104405_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A++L T+ G R C G W F T S+E C T S N V+C G
1
G W F T A I Q L T L A G R C G N W F T G S F E C T S N N V K C G
32
68.8% NZ_GL732493.1: Lanthipeptides: HMPREF0851_RS16015_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A R L T+Q G R C G F T S Y E C +P+V C G
1
G W Q T A F R L T M Q G R C G G V F T L S Y E C A T P H V S C G
32
66.7% NZ_VMLD01000009.1 and 3 others:
NZ_VMLI01000004.1 Lanthipeptides: HT696_RS02300_lanthipeptide NZ_VMMD01000015.1 Lanthipeptides: HT711_RS05565_lanthipeptide NZ_VMMI01000027.1 Lanthipeptides: HT721_RS06685_lanthipeptide
Lanthipeptides: HT679_RS04550_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G T A+R+T Q G R C G W F T S Y E C T S P N V R C
5
G L R T A I R M T S Q G R C G W A F T L S Y E C T S P N V R C
35
66.7% NZ_VMLD01000009.1 and 7 others:
NZ_VMLD01000009.1 Lanthipeptides: HT679_RS04530_lanthipeptide NZ_VMLI01000004.1 Lanthipeptides: HT696_RS02285_lanthipeptide NZ_VMLI01000004.1 Lanthipeptides: HT696_RS02280_lanthipeptide NZ_VMMD01000015.1 Lanthipeptides: HT711_RS05585_lanthipeptide NZ_VMMD01000015.1 Lanthipeptides: HT711_RS05580_lanthipeptide NZ_VMMI01000027.1 Lanthipeptides: HT721_RS06705_lanthipeptide NZ_VMMI01000027.1 Lanthipeptides: HT721_RS06700_lanthipeptide
Lanthipeptides: HT679_RS04535_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V+L++ G R C G W F T S+E C T S N V C G
1
G W F T A V Q L S L A G R C G R W F T G S F E C T S N N V S C G
32
65.6% NZ_AP023392.1 and 8 others:
NZ_CP015557.1 Lanthipeptides: A6M16_RS04825_lanthipeptide NZ_CP065430.1 Lanthipeptides: I5V48_RS05970_lanthipeptide NZ_CP100430.1 Lanthipeptides: NLY76_RS04560_lanthipeptide NZ_JAEUXF010000003.1 Lanthipeptides: JNE40_RS02525_lanthipeptide NZ_VMLD01000009.1 Lanthipeptides: HT679_RS04540_lanthipeptide NZ_VMLI01000004.1 Lanthipeptides: HT696_RS02290_lanthipeptide NZ_VMMD01000015.1 Lanthipeptides: HT711_RS05575_lanthipeptide NZ_VMMI01000027.1 Lanthipeptides: HT721_RS06695_lanthipeptide
Lanthipeptides: H7679_RS04975_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G W T A V+L++ G R C G W F T S+E C T S +V+C G
1
G W F T A V Q L S L A G R C G R W F T G S F E C T S N H V K C G
32
65.6% NZ_CP006910.1: Lanthipeptides: W903_RS05320_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G W T A +L T+ G R C G F T S E C T S N V R C
2
G W Y T A F K L T L A G R C G R C F T C S S E C T S N N V R C
32
65.6% NZ_CP014326.1: Lanthipeptides: AXK38_RS05590_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G W T A++L T+ G R C G F T S Y E C T S N V C
1
G W F T A I Q L T L A G R C G L C F T C S Y E C T S N N V H C
31
65.6% NZ_GL732493.1: Lanthipeptides: HMPREF0851_RS16585_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G W T A +L T+ G R C G F T S Y E C T S N V C
2
G W Y T A F K L T L A G R C G L C F T C S Y E C T S N N V H C
32
62.5% NZ_FZCI01000021.1 and 1 other:
NZ_JFJA01000026.1 Lanthipeptides: BM49_RS12025_lanthipeptide
Lanthipeptides: CFV25_RS09690_lanthipeptide
1
G W S-T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G W T A ++T+ G R C G F T S Y E C T+ N V R C
1
G W R Y T A F K M T L A G R C G L C F T C S Y E C T T N N V R C
32
60.6% NZ_AP024169.1: Lanthipeptides: bsdtb5_RS06110_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G S T A++L T+ G+C G + T S Y E C T S N V C G
1
G I S T A I Q L T L A G K C G G F P T I S Y E C T S N N V S C G
32
59.4% NZ_AP023392.1 and 8 others:
NZ_CP015557.1 Lanthipeptides: A6M16_RS10660_lanthipeptide NZ_CP065430.1 Lanthipeptides: I5V48_RS05975_lanthipeptide NZ_CP100430.1 Lanthipeptides: NLY76_RS04565_lanthipeptide NZ_JAEUXF010000003.1 Lanthipeptides: JNE40_RS02520_lanthipeptide NZ_VMLD01000009.1 Lanthipeptides: HT679_RS04545_lanthipeptide NZ_VMLI01000004.1 Lanthipeptides: HT696_RS02295_lanthipeptide NZ_VMMD01000015.1 Lanthipeptides: HT711_RS05570_lanthipeptide NZ_VMMI01000027.1 Lanthipeptides: HT721_RS06690_lanthipeptide
Lanthipeptides: H7679_RS04980_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G W +A ++T+ G R C G F T S Y E C T S N V C
2
G W Y S A F K M T L A G R C G R C F T C S Y E C T S N N V N C
32
59.4% NZ_CGZJ01000010.1 and 11 others:
NZ_CP028436.1 Lanthipeptides: DA395_RS05855_lanthipeptide NZ_CP113267.1 Lanthipeptides: OTB22_RS04705_lanthipeptide NZ_CRIA01000002.1 Lanthipeptides: AKS83_RS03035_lanthipeptide NZ_FHPK02000016.1 Lanthipeptides: AZ518_RS08960_lanthipeptide NZ_FNJT01000001.1 Lanthipeptides: BLS46_RS10015_lanthipeptide NZ_JALDWE010000003.1 Lanthipeptides: M1F86_RS04905_lanthipeptide NZ_JUQX01000059.1 Lanthipeptides: ADI74_RS08850_lanthipeptide NZ_LR699783.1 Lanthipeptides: F1569_RS10835_lanthipeptide NZ_NANQ01000004.1 Lanthipeptides: B5K28_RS02505_lanthipeptide NZ_NANU01000009.1 Lanthipeptides: B5K23_RS03050_lanthipeptide NZ_NCUW01000030.1 Lanthipeptides: B7709_RS10285_lanthipeptide
Lanthipeptides: AQF97_RS08520_lanthipeptide
2
W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
W T A ++T+ G R C G F T S Y E C T+ N V R C
3
W Y T A F K M T L A G R C G L C F T C S Y E C T T N N V R C
32
57.6% NZ_AP024169.1: Lanthipeptides: bsdtb5_RS06105_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G S T A+++T+ G+C G T S Y E C T S N V C G
1
G I S T A I Q M T L A G K C G R M P T I S Y E C T S N N V S C G
32
56.2% NZ_CP031248.1 and 2 others:
NZ_CP040803.1 Lanthipeptides: FHI56_RS00855_lanthipeptide NZ_CP090008.1 Lanthipeptides: LV497_RS10145_lanthipeptide
Lanthipeptides: DV130_RS02030_lanthipeptide
2
W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
W T A ++T+ G R C G F T S Y E C T+ N V C
3
W Y T A F K M T L A G R C G L C F T C S Y E C T T N N V H C
32
56.2% NZ_FMXT01000002.1: Lanthipeptides: BLR54_RS05805_lanthipeptide
4
T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
T A++L T+ G+C G F T S Y E C T S +V C G
2
T A I Q L T L A G K C G G A F T F S Y E C T S S H V S C G
30
53.1% NZ_JAENHX010000011.1: Lanthipeptides: JIN86_RS20330_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G T A++L T+ +C G +F T S Y E C T S N+ C
1
G I L T A I Q L T L A K K C G G Y F T A S Y E C T S N N I P C
31
52.8% NZ_CP014326.1: Lanthipeptides: AXK38_RS11340_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G T A L T Q G C G W F T+S+E C++P+V C G
5
G L H T A F I L T F Q G H C G W L F T Y S F E C S T P H V S C G
36
51.5% NZ_AP024169.1: Lanthipeptides: bsdtb5_RS06100_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C
31
G S T A+++T+ G R C G T S Y E C+S + R C
1
G I S T A I Q M T L A G R C G A V P T L S Y E C S S D H K R C
31
46.9% NZ_CP006910.1: Lanthipeptides: W903_RS05315_lanthipeptide
14
C G W W F T H S Y E C T S P N V R C G
32
C G W T S Y E C T+P N V R C G
1
C G W I L T Q S Y E C T T P N V R C G
19
41.3% NZ_FMXT01000002.1: Lanthipeptides: BLR54_RS05800_lanthipeptide
1
G W S T A V R L T V Q G R C G W W F T H S Y E C T S P N V R C G
32
G T A++L T+ G+C G F T S Y E C T S +V C G
15
G A G T A I Q L T L A G K C G R G F T I S Y E C T S S H V S C G
46
40.6% NZ_CGZJ01000010.1 and 1 other:
NZ_CRIA01000002.1 Lanthipeptides: AKS83_RS03030_lanthipeptide
Lanthipeptides: AQF97_RS08515_lanthipeptide
17
W F T H S Y E C T S P N V R C G
32
W F T S Y E C T S N V+C G
2
W F T G S Y E C T S N N V K C G
17
34.3% NZ_FMXT01000002.1: Lanthipeptides: BLR54_RS05795_lanthipeptide
1
G W S T A V R L T V Q G R-C G W W F T H S Y E C T S P N
28
G T A+R L T+ G R C T + C P
4
G V V T A L R L T L A G R C C D D A L T M A S A C C P P K
32
28.1% NZ_PVMZ01000043.1 and 1 other:
NZ_PVMZ01000043.1 Lanthipeptides: CLV67_RS49720_lanthipeptide
Lanthipeptides: CLV67_RS49720_lanthipeptide
15
G W W F T H S Y E C T S P N V R C G
32
G+ T+S Y E C+ P C G
11
G Y V C T Y S Y E C S F P K R L C G
28
28.1% NZ_QGGR01000002.1: Lanthipeptides: BC793_RS05490_lanthipeptide
15
G W W F T H S Y E C T S P N V R C G
32
G W T S+E C+ P C G
11
G W I C T V S W E C S V P K R L C G
28
25.0% NC_019673.1: Lanthipeptides: allorf_4537799_4537888_lanthipeptide
18
F T H S Y E C T S P N V R C
31
T H S +C T N R C
4
L T H S G D C T R S N S R C
17
25.0% NZ_CP025227.1: Lanthipeptides: allorf_0999194_0999376_lanthipeptide
19
T H S Y E C T S P N V R C G
32
T S+E C T P C G
15
T L S W E C T R P P R L C G
28
21.9% NZ_JAJAGO010000028.1 and 1 other:
NZ_JAJAGO010000028.1 Lanthipeptides: LHJ74_RS33590_lanthipeptide
Lanthipeptides: LHJ74_RS33590_lanthipeptide
12
G R C G W W F T H S Y E C
24
G G W W T + E C
13
G N D G W W C T L T K E C
25
15.0% NZ_JAQCQD010000003.1: Lanthipeptides: PGZ38_RS05480_lanthipeptide
1
G W S T A V R L T V Q G R C
14
G+S +V T++G+C
27
G F S V S V V K T L K G K C
40
allorf_18471_18653
Leader:
MGNWRTKPKSSKCFFGLSNFSFM
Core:
A K D A Q I Q I N Q T S I E P V I T I K L I T I K P L L Q P E I E P S L C
Core with dehydrations:
A K D A Q I Q I N Q Dhb Dha I E P V I Dhb I K L I Dhb I K P L L Q P E I E P Dha L Cys

#### MIBiG 3.1 matches for allorf_18471_18653

12.8% BGC0001229 (SBI_06990): Lanthipeptide: SBI-06990 A1 or SBI-06989 A2
12
S I E P V I T I K L I
22
+I P+ T+K+I
1
T I S P I D T V K I I
11

#### antiSMASH-DB 4.0 matches for allorf_18471_18653

100.0% NZ_CP040803.1 and 1 other:
NZ_CP090008.1 Lanthipeptides: allorf_071828_072010_lanthipeptide
Lanthipeptides: allorf_150532_150714_lanthipeptide
1
A K D A Q I Q I N Q T S I E P V I T I K L I T I K P L L Q P E I E P S L C
37
A K D A Q I Q I N Q T S I E P V I T I K L I T I K P L L Q P E I E P S L C
1
A K D A Q I Q I N Q T S I E P V I T I K L I T I K P L L Q P E I E P S L C
37

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg9_3 - Class II
  Cleavage pHMM score: -6.80
  RODEO score: 0
  Monoisotopic mass: 3517.7 Da
  Molecular weight: 3519.9 Da
  Number of bridges: 3
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    3537.9 Da N = 1
    3556.0 Da N = 2
    3574.0 Da N = 3
    3592.0 Da N = 4
allorf_18471_18653 - Class II
  Cleavage pHMM score: -7.20
  RODEO score: 0
  Monoisotopic mass: 4007.3 Da
  Molecular weight: 4009.7 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    4027.7 Da N = 1
    4045.8 Da N = 2
    4063.8 Da N = 3
    4081.8 Da N = 4

gnlProkkaOGGFDOBN_12 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 130,420 - 142,516 nt. (total: 12,097 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

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Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.