Select genomic region:
Overview
2.1
34.1
94.1
94.2
115.1
119.1
124.1
148.1
150.1
153.1
164.1

### Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_2)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 2.1 | Putrescine2spermidine | Aliphatic_amine | 3,395 | 26,643 | Putrescine2spermidine E. rectale | SPRM | 100%

c00034_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_34)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 34.1 | TPP_AA_metabolism | Putative | 17,691 | 43,228 |

c00094_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_134)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 94.1 | PFOR_II_pathway | SCFA | 1 | 18,941 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 94.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 22,985 | 51,137 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00115_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_345)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 115.1 | Rnf_complex | E-MGC | 1 | 24,804 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

c00119_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_389)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 119.1 | Rnf_complex | E-MGC | 1 | 23,093 | Rnf complex C. sporogenes | RNF | 100%

c00124_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_444)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 124.1 | Acetyl-CoA_pathway | SCFA | 33,357 | 67,435 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%

c00148_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_678)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 148.1 | GR_eut-pdu-related | Putative | 1 | 17,083 | Propanediol degradation S. enterica | PDU | 33%

c00150_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_700)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 150.1 | Others_HGD_unassigned | Putative | 1 | 13,108 |

c00153_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_733)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 153.1 | succinate2propionate | SCFA | 1 | 16,306 | Succinate to propionate B. theta | PRO | 33%

c00164_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_842)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 164.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 1 | 13,498 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 2.1 | Putrescine2spermidine | Aliphatic_amine | 3,395 | 26,643 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 34.1 | TPP_AA_metabolism | Putative | 17,691 | 43,228 |
Region 94.1 | PFOR_II_pathway | SCFA | 1 | 18,941 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 94.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 22,985 | 51,137 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 115.1 | Rnf_complex | E-MGC | 1 | 24,804 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%
Region 119.1 | Rnf_complex | E-MGC | 1 | 23,093 | Rnf complex C. sporogenes | RNF | 100%
Region 124.1 | Acetyl-CoA_pathway | SCFA | 33,357 | 67,435 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%
Region 148.1 | GR_eut-pdu-related | Putative | 1 | 17,083 | Propanediol degradation S. enterica | PDU | 33%
Region 150.1 | Others_HGD_unassigned | Putative | 1 | 13,108 |
Region 153.1 | succinate2propionate | SCFA | 1 | 16,306 | Succinate to propionate B. theta | PRO | 33%
Region 164.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 1 | 13,498 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_1)
  c00003_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_33)
  c00035_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_100)
  c00091_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_111)
  c00092_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_112)
  c00093_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_123)
  c00095_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_145)
  c00096_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_156)
  c00097_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_167)
  c00098_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_178)
  c00099_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_189)
  c00100_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_200)
  c00101_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_211)
  c00102_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_222)
  c00103_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_223)
  c00104_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_234)
  c00105_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_245)
  c00106_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_256)
  c00107_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_267)
  c00108_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_278)
  c00109_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_289)
  c00110_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_300)
  c00111_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_311)
  c00112_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_322)
  c00113_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_333)
  c00114_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_334)
  c00116_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_356)
  c00117_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_367)
  c00118_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_378)
  c00120_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_400)
  c00121_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_411)
  c00122_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_422)
  c00123_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_433)
  c00125_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_445)
  c00126_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_456)
  c00127_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_467)
  c00128_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_478)
  c00129_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_489)
  c00130_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_500)
  c00131_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_511)
  c00132_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_522)
  c00133_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_533)
  c00134_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_544)
  c00135_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_555)
  c00136_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_556)
  c00137_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_567)
  c00138_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_578)
  c00139_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_589)
  c00140_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_600)
  c00141_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_611)
  c00142_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_622)
  c00143_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_633)
  c00144_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_644)
  c00145_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_655)
  c00146_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_666)
  c00147_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_667)
  c00149_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_689)
  c00151_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_711)
  c00152_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_722)
  c00154_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_744)
  c00155_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_755)
  c00156_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_766)
  c00157_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_777)
  c00158_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_778)
  c00159_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_789)
  c00160_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_800)
  c00161_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_811)
  c00162_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_822)
  c00163_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_833)
  c00165_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_843)
  c00166_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_844)
  c00167_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_845)
  c00168_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_846)
  c00169_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_847)
  c00170_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_848)
  c00171_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_849)
  c00172_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_850)
  c00173_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_851)
  c00174_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_852)
  c00175_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_853)
  c00176_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_854)
  c00177_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_855)
  c00178_gnlPro.. (original name was: gnl|Prokka|KJLFBMDF_856)

Compact view
c00002_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 3,395 - 26,643 nt. (total: 23,249 nt) Show pHMM detection rules used
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00034_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 17,691 - 43,228 nt. (total: 25,538 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00094_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 18,941 nt. (total: 18,941 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00094_gnlPro.. - Region 2 - GR_AA_metabolism,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 22,985 - 51,137 nt. (total: 28,153 nt) Show pHMM detection rules used
Region on contig edge.
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00115_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 24,804 nt. (total: 24,804 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00119_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,093 nt. (total: 23,093 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00124_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 33,357 - 67,435 nt. (total: 34,079 nt) Show pHMM detection rules used
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00148_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,083 nt. (total: 17,083 nt) Show pHMM detection rules used
Region on contig edge.
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00150_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,108 nt. (total: 13,108 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00153_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 16,306 nt. (total: 16,306 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00164_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,498 nt. (total: 13,498 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.