GCA_020560265.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	308,689	331,644	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 1.2	TPP_AA_metabolism	Putative	646,688	672,769

c00002_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	80,467	103,937	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00003_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	succinate2propionate	SCFA	68,256	92,964	Succinate to propionate B. theta	PRO	75%

c00008_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	porA	SCFA	54,906	77,749	porA C. sporogenes	POR	80%

c00012_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	NADH_dehydrogenase_I	E-MGC	256,568	286,799	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00023_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	PFOR_II_pathway	SCFA	137,978	161,535	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00034_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Rnf_complex	E-MGC	245,680	270,914	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00004_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_24); c00005_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_35); c00006_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_38); c00007_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_39); c00009_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_41); c00010_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_42); c00011_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_43); c00013_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_45); c00014_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_46); c00015_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_47); c00016_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_48); c00017_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_49); c00018_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_50); c00019_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_51); c00020_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_52); c00021_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_53); c00022_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_54); c00024_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_56); c00025_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_57); c00026_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_58); c00027_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_59); c00028_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_60); c00029_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_61); c00030_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_62); c00031_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_63); c00032_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_64); c00033_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_65); c00035_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_67); c00036_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_68); c00037_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_69); c00038_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_70); c00039_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_71); c00040_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_72); c00041_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_73); c00042_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_74); c00043_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_75); c00044_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_76); c00045_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_77); c00046_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_78); c00047_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_79); c00048_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_80); c00049_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_81); c00050_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_82); c00051_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_83); c00052_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_84); c00053_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_85); c00054_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_86); c00055_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_87); c00056_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_88); c00057_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_89); c00058_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_90); c00059_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_91); c00060_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_92); c00061_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_93); c00062_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_94); c00063_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_95); c00064_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_96); c00065_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_97); c00066_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_98); c00067_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_99); c00068_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_100); c00069_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_110); c00070_gnlPro.. (original name was: gnl|Prokka|BBNAHJAA_121)

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 308,689 - 331,644 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00001_gnlPro.. - Region 2 - TPP_AA_metabolism

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Location: 646,688 - 672,769 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00002_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 80,467 - 103,937 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00003_gnlPro.. - Region 1 - succinate2propionate

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Location: 68,256 - 92,964 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00008_gnlPro.. - Region 1 - porA

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Location: 54,906 - 77,749 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00012_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 256,568 - 286,799 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00023_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 137,978 - 161,535 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00034_gnlPro.. - Region 1 - Rnf_complex

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Location: 245,680 - 270,914 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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