Select genomic region:
Overview
13.1
26.1
27.1
29.1
33.1
42.1
44.1
51.1
66.1
86.1
90.1
94.1
99.1

### Identified primary metabolite regions

c00013_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Others_HGD_unassigned | Putative | 77,904 | 93,786 |

c00026_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_26)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 26.1 | OD_fatty_acids,OD_unknown,porA | SCFA | 1 | 47,645 | Acetate to butyrate C. sporogenes | BUT | 66%

c00027_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_27)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 27.1 | Putrescine2spermidine | Aliphatic_amine | 46,073 | 70,165 | Arginine2putrescine R. gnavus | PUTR | 100%

c00029_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_29)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 29.1 | PFOR_II_pathway | SCFA | 24,757 | 48,287 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00033_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_33)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | porA,OD_unknown | Putative | 40,047 | 64,727 | porA C. sporogenes | POR | 40%

c00042_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_42)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 42.1 | Flavoenzyme_AA_peptides_catabolism | Putative | 1 | 22,265 | Histidine to glutamate K. pneumoniae | GLU | 40%

c00044_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_44)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 44.1 | Pyruvate2acetate-formate | SCFA | 94,005 | 125,023 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00051_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_51)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 51.1 | OD_unknown | Putative | 48,730 | 61,515 |

c00066_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_66)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 66.1 | Flavoenzyme_AA_peptides_catabolism,Others_HGD_unassigned | Putative | 1 | 17,336 |

c00086_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_86)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 86.1 | Flavoenzyme_AA_peptides_catabolism | Putative | 1,403 | 23,000 |

c00090_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_90)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 90.1 | Rnf_complex | E-MGC | 1 | 22,695 | Rnf complex C. sporogenes | RNF | 83%

c00094_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_94)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 94.1 | succinate2propionate | SCFA | 10,008 | 25,611 | Succinate to propionate B. theta | PRO | 33%

c00099_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_99)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 99.1 | GR_eut-pdu-related,EUT_pathway | SCFA-other | 46,025 | 86,612 | Ethanolamine degradation S. typhimurium | EUT | 47%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Others_HGD_unassigned | Putative | 77,904 | 93,786 |
Region 26.1 | OD_fatty_acids,OD_unknown,porA | SCFA | 1 | 47,645 | Acetate to butyrate C. sporogenes | BUT | 66%
Region 27.1 | Putrescine2spermidine | Aliphatic_amine | 46,073 | 70,165 | Arginine2putrescine R. gnavus | PUTR | 100%
Region 29.1 | PFOR_II_pathway | SCFA | 24,757 | 48,287 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 33.1 | porA,OD_unknown | Putative | 40,047 | 64,727 | porA C. sporogenes | POR | 40%
Region 42.1 | Flavoenzyme_AA_peptides_catabolism | Putative | 1 | 22,265 | Histidine to glutamate K. pneumoniae | GLU | 40%
Region 44.1 | Pyruvate2acetate-formate | SCFA | 94,005 | 125,023 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 51.1 | OD_unknown | Putative | 48,730 | 61,515 |
Region 66.1 | Flavoenzyme_AA_peptides_catabolism,Others_HGD_unassigned | Putative | 1 | 17,336 |
Region 86.1 | Flavoenzyme_AA_peptides_catabolism | Putative | 1,403 | 23,000 |
Region 90.1 | Rnf_complex | E-MGC | 1 | 22,695 | Rnf complex C. sporogenes | RNF | 83%
Region 94.1 | succinate2propionate | SCFA | 10,008 | 25,611 | Succinate to propionate B. theta | PRO | 33%
Region 99.1 | GR_eut-pdu-related,EUT_pathway | SCFA-other | 46,025 | 86,612 | Ethanolamine degradation S. typhimurium | EUT | 47%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_25)
  c00028_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_28)
  c00030_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_32)
  c00034_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_41)
  c00043_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_43)
  c00045_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_50)
  c00052_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_65)
  c00067_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_85)
  c00087_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_89)
  c00091_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_93)
  c00095_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_98)
  c00100_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|HGONDGJO_120)

Compact view
c00013_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 77,904 - 93,786 nt. (total: 15,883 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00026_gnlPro.. - Region 1 - OD_fatty_acids,OD_unknown,porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 47,645 nt. (total: 47,645 nt) Show pHMM detection rules used
Region on contig edge.
OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00027_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 46,073 - 70,165 nt. (total: 24,093 nt) Show pHMM detection rules used
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00029_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 24,757 - 48,287 nt. (total: 23,531 nt) Show pHMM detection rules used
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00033_gnlPro.. - Region 1 - OD_unknown,porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 40,047 - 64,727 nt. (total: 24,681 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00042_gnlPro.. - Region 1 - Flavoenzyme_AA_peptides_catabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 22,265 nt. (total: 22,265 nt) Show pHMM detection rules used
Region on contig edge.
Flavoenzyme_AA_peptides_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00044_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 94,005 - 125,023 nt. (total: 31,019 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00051_gnlPro.. - Region 1 - OD_unknown
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 48,730 - 61,515 nt. (total: 12,786 nt) Show pHMM detection rules used
Region on contig edge.
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00066_gnlPro.. - Region 1 - Flavoenzyme_AA_peptides_catabolism,Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,336 nt. (total: 17,336 nt) Show pHMM detection rules used
Region on contig edge.
Flavoenzyme_AA_peptides_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]))
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00086_gnlPro.. - Region 1 - Flavoenzyme_AA_peptides_catabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,403 - 23,000 nt. (total: 21,598 nt) Show pHMM detection rules used
Flavoenzyme_AA_peptides_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00090_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 22,695 nt. (total: 22,695 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00094_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 10,008 - 25,611 nt. (total: 15,604 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00099_gnlPro.. - Region 1 - EUT_pathway,GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 46,025 - 86,612 nt. (total: 40,588 nt) Show pHMM detection rules used
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))
EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.