GCA_020785675.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPCHEHPGP_281 (original name was: gnl|Prokka|PCHEHPGP_281)

Region	Type	From	To	Most similar known cluster		Similarity
Region 118.1	NRPS	1	48,008	micrococcin P1	RiPP:Thiopeptide	8%

gnlProkkaPCHEHPGP_285 (original name was: gnl|Prokka|PCHEHPGP_285)

Region	Type	From	To	Most similar known cluster		Similarity
Region 122.1	T3PKS	1	29,070

No secondary metabolite regions were found in these records:: gnlProkkaPCHEHPGP_2 (original name was: gnl|Prokka|PCHEHPGP_2); gnlProkkaPCHEHPGP_4 (original name was: gnl|Prokka|PCHEHPGP_4); gnlProkkaPCHEHPGP_5 (original name was: gnl|Prokka|PCHEHPGP_5); gnlProkkaPCHEHPGP_17 (original name was: gnl|Prokka|PCHEHPGP_17); gnlProkkaPCHEHPGP_18 (original name was: gnl|Prokka|PCHEHPGP_18); gnlProkkaPCHEHPGP_43 (original name was: gnl|Prokka|PCHEHPGP_43); gnlProkkaPCHEHPGP_64 (original name was: gnl|Prokka|PCHEHPGP_64); gnlProkkaPCHEHPGP_86 (original name was: gnl|Prokka|PCHEHPGP_86); gnlProkkaPCHEHPGP_91 (original name was: gnl|Prokka|PCHEHPGP_91); gnlProkkaPCHEHPGP_94 (original name was: gnl|Prokka|PCHEHPGP_94); gnlProkkaPCHEHPGP_96 (original name was: gnl|Prokka|PCHEHPGP_96); gnlProkkaPCHEHPGP_97 (original name was: gnl|Prokka|PCHEHPGP_97); gnlProkkaPCHEHPGP_98 (original name was: gnl|Prokka|PCHEHPGP_98); gnlProkkaPCHEHPGP_99 (original name was: gnl|Prokka|PCHEHPGP_99); gnlProkkaPCHEHPGP_100 (original name was: gnl|Prokka|PCHEHPGP_100); gnlProkkaPCHEHPGP_120 (original name was: gnl|Prokka|PCHEHPGP_120); gnlProkkaPCHEHPGP_121 (original name was: gnl|Prokka|PCHEHPGP_121); gnlProkkaPCHEHPGP_122 (original name was: gnl|Prokka|PCHEHPGP_122); gnlProkkaPCHEHPGP_124 (original name was: gnl|Prokka|PCHEHPGP_124); gnlProkkaPCHEHPGP_135 (original name was: gnl|Prokka|PCHEHPGP_135); gnlProkkaPCHEHPGP_138 (original name was: gnl|Prokka|PCHEHPGP_138); gnlProkkaPCHEHPGP_139 (original name was: gnl|Prokka|PCHEHPGP_139); gnlProkkaPCHEHPGP_140 (original name was: gnl|Prokka|PCHEHPGP_140); gnlProkkaPCHEHPGP_141 (original name was: gnl|Prokka|PCHEHPGP_141); gnlProkkaPCHEHPGP_146 (original name was: gnl|Prokka|PCHEHPGP_146); gnlProkkaPCHEHPGP_148 (original name was: gnl|Prokka|PCHEHPGP_148); gnlProkkaPCHEHPGP_150 (original name was: gnl|Prokka|PCHEHPGP_150); gnlProkkaPCHEHPGP_152 (original name was: gnl|Prokka|PCHEHPGP_152); gnlProkkaPCHEHPGP_157 (original name was: gnl|Prokka|PCHEHPGP_157); gnlProkkaPCHEHPGP_183 (original name was: gnl|Prokka|PCHEHPGP_183); gnlProkkaPCHEHPGP_184 (original name was: gnl|Prokka|PCHEHPGP_184); gnlProkkaPCHEHPGP_185 (original name was: gnl|Prokka|PCHEHPGP_185); gnlProkkaPCHEHPGP_186 (original name was: gnl|Prokka|PCHEHPGP_186); gnlProkkaPCHEHPGP_188 (original name was: gnl|Prokka|PCHEHPGP_188); gnlProkkaPCHEHPGP_189 (original name was: gnl|Prokka|PCHEHPGP_189); gnlProkkaPCHEHPGP_191 (original name was: gnl|Prokka|PCHEHPGP_191); gnlProkkaPCHEHPGP_192 (original name was: gnl|Prokka|PCHEHPGP_192); gnlProkkaPCHEHPGP_193 (original name was: gnl|Prokka|PCHEHPGP_193); gnlProkkaPCHEHPGP_194 (original name was: gnl|Prokka|PCHEHPGP_194); gnlProkkaPCHEHPGP_195 (original name was: gnl|Prokka|PCHEHPGP_195); gnlProkkaPCHEHPGP_196 (original name was: gnl|Prokka|PCHEHPGP_196); gnlProkkaPCHEHPGP_197 (original name was: gnl|Prokka|PCHEHPGP_197); gnlProkkaPCHEHPGP_198 (original name was: gnl|Prokka|PCHEHPGP_198); gnlProkkaPCHEHPGP_199 (original name was: gnl|Prokka|PCHEHPGP_199); gnlProkkaPCHEHPGP_200 (original name was: gnl|Prokka|PCHEHPGP_200); gnlProkkaPCHEHPGP_202 (original name was: gnl|Prokka|PCHEHPGP_202); gnlProkkaPCHEHPGP_203 (original name was: gnl|Prokka|PCHEHPGP_203); gnlProkkaPCHEHPGP_204 (original name was: gnl|Prokka|PCHEHPGP_204); gnlProkkaPCHEHPGP_205 (original name was: gnl|Prokka|PCHEHPGP_205); gnlProkkaPCHEHPGP_206 (original name was: gnl|Prokka|PCHEHPGP_206); gnlProkkaPCHEHPGP_207 (original name was: gnl|Prokka|PCHEHPGP_207); gnlProkkaPCHEHPGP_208 (original name was: gnl|Prokka|PCHEHPGP_208); gnlProkkaPCHEHPGP_209 (original name was: gnl|Prokka|PCHEHPGP_209); gnlProkkaPCHEHPGP_210 (original name was: gnl|Prokka|PCHEHPGP_210); gnlProkkaPCHEHPGP_211 (original name was: gnl|Prokka|PCHEHPGP_211); gnlProkkaPCHEHPGP_213 (original name was: gnl|Prokka|PCHEHPGP_213); gnlProkkaPCHEHPGP_214 (original name was: gnl|Prokka|PCHEHPGP_214); gnlProkkaPCHEHPGP_215 (original name was: gnl|Prokka|PCHEHPGP_215); gnlProkkaPCHEHPGP_216 (original name was: gnl|Prokka|PCHEHPGP_216); gnlProkkaPCHEHPGP_217 (original name was: gnl|Prokka|PCHEHPGP_217); gnlProkkaPCHEHPGP_218 (original name was: gnl|Prokka|PCHEHPGP_218); gnlProkkaPCHEHPGP_219 (original name was: gnl|Prokka|PCHEHPGP_219); gnlProkkaPCHEHPGP_220 (original name was: gnl|Prokka|PCHEHPGP_220); gnlProkkaPCHEHPGP_221 (original name was: gnl|Prokka|PCHEHPGP_221); gnlProkkaPCHEHPGP_222 (original name was: gnl|Prokka|PCHEHPGP_222); gnlProkkaPCHEHPGP_225 (original name was: gnl|Prokka|PCHEHPGP_225); gnlProkkaPCHEHPGP_226 (original name was: gnl|Prokka|PCHEHPGP_226); gnlProkkaPCHEHPGP_227 (original name was: gnl|Prokka|PCHEHPGP_227); gnlProkkaPCHEHPGP_228 (original name was: gnl|Prokka|PCHEHPGP_228); gnlProkkaPCHEHPGP_229 (original name was: gnl|Prokka|PCHEHPGP_229); gnlProkkaPCHEHPGP_230 (original name was: gnl|Prokka|PCHEHPGP_230); gnlProkkaPCHEHPGP_231 (original name was: gnl|Prokka|PCHEHPGP_231); gnlProkkaPCHEHPGP_232 (original name was: gnl|Prokka|PCHEHPGP_232); gnlProkkaPCHEHPGP_233 (original name was: gnl|Prokka|PCHEHPGP_233); gnlProkkaPCHEHPGP_234 (original name was: gnl|Prokka|PCHEHPGP_234); gnlProkkaPCHEHPGP_236 (original name was: gnl|Prokka|PCHEHPGP_236); gnlProkkaPCHEHPGP_237 (original name was: gnl|Prokka|PCHEHPGP_237); gnlProkkaPCHEHPGP_238 (original name was: gnl|Prokka|PCHEHPGP_238); gnlProkkaPCHEHPGP_239 (original name was: gnl|Prokka|PCHEHPGP_239); gnlProkkaPCHEHPGP_240 (original name was: gnl|Prokka|PCHEHPGP_240); gnlProkkaPCHEHPGP_241 (original name was: gnl|Prokka|PCHEHPGP_241); gnlProkkaPCHEHPGP_242 (original name was: gnl|Prokka|PCHEHPGP_242); gnlProkkaPCHEHPGP_243 (original name was: gnl|Prokka|PCHEHPGP_243); gnlProkkaPCHEHPGP_244 (original name was: gnl|Prokka|PCHEHPGP_244); gnlProkkaPCHEHPGP_245 (original name was: gnl|Prokka|PCHEHPGP_245); gnlProkkaPCHEHPGP_247 (original name was: gnl|Prokka|PCHEHPGP_247); gnlProkkaPCHEHPGP_248 (original name was: gnl|Prokka|PCHEHPGP_248); gnlProkkaPCHEHPGP_249 (original name was: gnl|Prokka|PCHEHPGP_249); gnlProkkaPCHEHPGP_250 (original name was: gnl|Prokka|PCHEHPGP_250); gnlProkkaPCHEHPGP_251 (original name was: gnl|Prokka|PCHEHPGP_251); gnlProkkaPCHEHPGP_252 (original name was: gnl|Prokka|PCHEHPGP_252); gnlProkkaPCHEHPGP_253 (original name was: gnl|Prokka|PCHEHPGP_253); gnlProkkaPCHEHPGP_254 (original name was: gnl|Prokka|PCHEHPGP_254); gnlProkkaPCHEHPGP_255 (original name was: gnl|Prokka|PCHEHPGP_255); gnlProkkaPCHEHPGP_256 (original name was: gnl|Prokka|PCHEHPGP_256); gnlProkkaPCHEHPGP_258 (original name was: gnl|Prokka|PCHEHPGP_258); gnlProkkaPCHEHPGP_259 (original name was: gnl|Prokka|PCHEHPGP_259); gnlProkkaPCHEHPGP_260 (original name was: gnl|Prokka|PCHEHPGP_260); gnlProkkaPCHEHPGP_261 (original name was: gnl|Prokka|PCHEHPGP_261); gnlProkkaPCHEHPGP_262 (original name was: gnl|Prokka|PCHEHPGP_262); gnlProkkaPCHEHPGP_263 (original name was: gnl|Prokka|PCHEHPGP_263); gnlProkkaPCHEHPGP_264 (original name was: gnl|Prokka|PCHEHPGP_264); gnlProkkaPCHEHPGP_265 (original name was: gnl|Prokka|PCHEHPGP_265); gnlProkkaPCHEHPGP_266 (original name was: gnl|Prokka|PCHEHPGP_266); gnlProkkaPCHEHPGP_267 (original name was: gnl|Prokka|PCHEHPGP_267); gnlProkkaPCHEHPGP_269 (original name was: gnl|Prokka|PCHEHPGP_269); gnlProkkaPCHEHPGP_270 (original name was: gnl|Prokka|PCHEHPGP_270); gnlProkkaPCHEHPGP_271 (original name was: gnl|Prokka|PCHEHPGP_271); gnlProkkaPCHEHPGP_272 (original name was: gnl|Prokka|PCHEHPGP_272); gnlProkkaPCHEHPGP_273 (original name was: gnl|Prokka|PCHEHPGP_273); gnlProkkaPCHEHPGP_274 (original name was: gnl|Prokka|PCHEHPGP_274); gnlProkkaPCHEHPGP_275 (original name was: gnl|Prokka|PCHEHPGP_275); gnlProkkaPCHEHPGP_276 (original name was: gnl|Prokka|PCHEHPGP_276); gnlProkkaPCHEHPGP_277 (original name was: gnl|Prokka|PCHEHPGP_277); gnlProkkaPCHEHPGP_278 (original name was: gnl|Prokka|PCHEHPGP_278); gnlProkkaPCHEHPGP_279 (original name was: gnl|Prokka|PCHEHPGP_279); gnlProkkaPCHEHPGP_280 (original name was: gnl|Prokka|PCHEHPGP_280); gnlProkkaPCHEHPGP_282 (original name was: gnl|Prokka|PCHEHPGP_282); gnlProkkaPCHEHPGP_283 (original name was: gnl|Prokka|PCHEHPGP_283); gnlProkkaPCHEHPGP_284 (original name was: gnl|Prokka|PCHEHPGP_284); gnlProkkaPCHEHPGP_286 (original name was: gnl|Prokka|PCHEHPGP_286); gnlProkkaPCHEHPGP_290 (original name was: gnl|Prokka|PCHEHPGP_290); gnlProkkaPCHEHPGP_305 (original name was: gnl|Prokka|PCHEHPGP_305); gnlProkkaPCHEHPGP_306 (original name was: gnl|Prokka|PCHEHPGP_306); gnlProkkaPCHEHPGP_316 (original name was: gnl|Prokka|PCHEHPGP_316); gnlProkkaPCHEHPGP_332 (original name was: gnl|Prokka|PCHEHPGP_332); gnlProkkaPCHEHPGP_333 (original name was: gnl|Prokka|PCHEHPGP_333); gnlProkkaPCHEHPGP_334 (original name was: gnl|Prokka|PCHEHPGP_334); gnlProkkaPCHEHPGP_348 (original name was: gnl|Prokka|PCHEHPGP_348)

Compact view

gnlProkkaPCHEHPGP_281 - Region 1 - NRPS

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Location: 1 - 48,008 nt. (total: 48,008 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 48008:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ala) + (X) + (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg118_38

Search NORINE for peptide: strict or relaxed

AMP-binding (484..878): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code(s):: Thr DFWNIGMVHK (91% 8Å match)
Stachelhaus code match:: 100% (strong)

ctg118_39

AMP-binding (267..640): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: pro (Pro)
Single AA prediction:: pro (Pro)

Stachelhaus prediction details:

Stachelhaus sequence:: DVRHFALLAK
Nearest Stachelhaus code(s):: Asp DVRHFALMAK (74% 8Å match)
Stachelhaus code match:: 90% (moderate)

ctg118_40

Search NORINE for peptide: strict or relaxed

AMP-binding (7..393): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: ala (Ala)

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code(s):: Ala DLFNNALTYK (76% 8Å match)
Stachelhaus code match:: 100% (strong)

gnlProkkaPCHEHPGP_285 - Region 1 - T3PKS

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Location: 1 - 29,070 nt. (total: 29,070 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.