GCA_020809955.1 - 7 region(s)

Identified primary metabolite regions

c00018_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Rnf_complex	E-MGC	25,032	50,092	Rnf complex C. sporogenes	RNF	83%

c00041_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	OD_unknown	Putative	18,689	41,202

c00062_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_62)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	TPP_AA_metabolism	Putative	1	16,992

c00071_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_71)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	porA	SCFA	26,063	48,898	porA C. sporogenes	POR	60%

c00082_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_82)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 82.1	succinate2propionate	SCFA	10,758	35,293	Succinate to propionate B. theta	PRO	50%

c00095_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_95)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 95.1	Pyruvate2acetate-formate	SCFA	100,954	123,929	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00108_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_108)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 108.1	Fumarate2succinate	SCFA	1	13,640	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_1); c00002_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_2); c00003_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_3); c00004_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_4); c00005_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_5); c00006_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_6); c00007_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_7); c00008_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_8); c00009_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_9); c00010_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_10); c00011_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_11); c00012_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_12); c00013_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_13); c00014_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_14); c00015_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_15); c00016_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_16); c00017_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_17); c00019_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_19); c00020_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_20); c00021_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_21); c00022_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_22); c00023_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_23); c00024_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_24); c00025_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_25); c00026_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_26); c00027_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_27); c00028_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_28); c00029_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_29); c00030_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_30); c00031_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_31); c00032_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_32); c00033_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_33); c00034_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_34); c00035_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_35); c00036_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_36); c00037_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_37); c00038_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_38); c00039_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_39); c00040_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_40); c00042_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_42); c00043_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_43); c00044_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_44); c00045_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_45); c00046_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_46); c00047_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_47); c00048_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_48); c00049_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_49); c00050_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_50); c00051_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_51); c00052_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_52); c00053_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_53); c00054_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_54); c00055_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_55); c00056_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_56); c00057_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_57); c00058_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_58); c00059_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_59); c00060_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_60); c00061_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_61); c00063_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_63); c00064_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_64); c00065_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_65); c00066_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_66); c00067_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_67); c00068_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_68); c00069_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_69); c00070_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_70); c00072_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_72); c00073_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_73); c00074_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_74); c00075_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_75); c00076_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_76); c00077_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_77); c00078_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_78); c00079_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_79); c00080_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_80); c00081_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_81); c00083_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_83); c00084_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_84); c00085_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_85); c00086_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_86); c00087_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_87); c00088_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_88); c00089_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_89); c00090_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_90); c00091_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_91); c00092_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_92); c00093_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_93); c00094_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_94); c00096_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_96); c00097_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_97); c00098_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_98); c00099_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_99); c00100_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_100); c00101_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_101); c00102_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_102); c00103_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_103); c00104_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_104); c00105_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_105); c00106_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_106); c00107_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_107); c00109_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_109); c00110_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_110); c00111_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_111); c00112_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_112); c00113_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_113); c00114_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_114); c00115_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_115); c00116_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_116); c00117_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_117); c00118_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_118); c00119_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_119); c00120_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_120); c00121_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_121); c00122_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_122); c00123_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_123); c00124_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_124); c00125_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_125); c00126_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_126); c00127_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_127); c00128_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_128); c00129_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_129); c00130_gnlPro.. (original name was: gnl|Prokka|BJHEGJAI_130)

Compact view

c00018_gnlPro.. - Region 1 - Rnf_complex

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Location: 25,032 - 50,092 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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KnownClusterBlast

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c00041_gnlPro.. - Region 1 - OD_unknown

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Location: 18,689 - 41,202 nt. (total: 22,514 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

c00062_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 16,992 nt. (total: 16,992 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00071_gnlPro.. - Region 1 - porA

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Location: 26,063 - 48,898 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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KnownClusterBlast

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c00082_gnlPro.. - Region 1 - succinate2propionate

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Location: 10,758 - 35,293 nt. (total: 24,536 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00095_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 100,954 - 123,929 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00108_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,640 nt. (total: 13,640 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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