GCA_021133835.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLFDOHPGH_31 (original name was: gnl|Prokka|LFDOHPGH_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	146,387	157,577

gnlProkkaLFDOHPGH_53 (original name was: gnl|Prokka|LFDOHPGH_53)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	lanthipeptide-class-iv	15,908	38,103

gnlProkkaLFDOHPGH_64 (original name was: gnl|Prokka|LFDOHPGH_64)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	lanthipeptide-class-iii	64,292	86,793

Region	Type	From	To	Similarity
Region 12.1	RiPP-like	146,387	157,577
Region 34.1	lanthipeptide-class-iv	15,908	38,103
Region 36.1	lanthipeptide-class-iii	64,292	86,793

No secondary metabolite regions were found in these records:: gnlProkkaLFDOHPGH_1 (original name was: gnl|Prokka|LFDOHPGH_1); gnlProkkaLFDOHPGH_2 (original name was: gnl|Prokka|LFDOHPGH_2); gnlProkkaLFDOHPGH_13 (original name was: gnl|Prokka|LFDOHPGH_13); gnlProkkaLFDOHPGH_23 (original name was: gnl|Prokka|LFDOHPGH_23); gnlProkkaLFDOHPGH_24 (original name was: gnl|Prokka|LFDOHPGH_24); gnlProkkaLFDOHPGH_25 (original name was: gnl|Prokka|LFDOHPGH_25); gnlProkkaLFDOHPGH_26 (original name was: gnl|Prokka|LFDOHPGH_26); gnlProkkaLFDOHPGH_27 (original name was: gnl|Prokka|LFDOHPGH_27); gnlProkkaLFDOHPGH_28 (original name was: gnl|Prokka|LFDOHPGH_28); gnlProkkaLFDOHPGH_29 (original name was: gnl|Prokka|LFDOHPGH_29); gnlProkkaLFDOHPGH_30 (original name was: gnl|Prokka|LFDOHPGH_30); gnlProkkaLFDOHPGH_32 (original name was: gnl|Prokka|LFDOHPGH_32); gnlProkkaLFDOHPGH_33 (original name was: gnl|Prokka|LFDOHPGH_33); gnlProkkaLFDOHPGH_34 (original name was: gnl|Prokka|LFDOHPGH_34); gnlProkkaLFDOHPGH_35 (original name was: gnl|Prokka|LFDOHPGH_35); gnlProkkaLFDOHPGH_36 (original name was: gnl|Prokka|LFDOHPGH_36); gnlProkkaLFDOHPGH_37 (original name was: gnl|Prokka|LFDOHPGH_37); gnlProkkaLFDOHPGH_38 (original name was: gnl|Prokka|LFDOHPGH_38); gnlProkkaLFDOHPGH_39 (original name was: gnl|Prokka|LFDOHPGH_39); gnlProkkaLFDOHPGH_40 (original name was: gnl|Prokka|LFDOHPGH_40); gnlProkkaLFDOHPGH_41 (original name was: gnl|Prokka|LFDOHPGH_41); gnlProkkaLFDOHPGH_42 (original name was: gnl|Prokka|LFDOHPGH_42); gnlProkkaLFDOHPGH_43 (original name was: gnl|Prokka|LFDOHPGH_43); gnlProkkaLFDOHPGH_44 (original name was: gnl|Prokka|LFDOHPGH_44); gnlProkkaLFDOHPGH_45 (original name was: gnl|Prokka|LFDOHPGH_45); gnlProkkaLFDOHPGH_46 (original name was: gnl|Prokka|LFDOHPGH_46); gnlProkkaLFDOHPGH_47 (original name was: gnl|Prokka|LFDOHPGH_47); gnlProkkaLFDOHPGH_48 (original name was: gnl|Prokka|LFDOHPGH_48); gnlProkkaLFDOHPGH_49 (original name was: gnl|Prokka|LFDOHPGH_49); gnlProkkaLFDOHPGH_50 (original name was: gnl|Prokka|LFDOHPGH_50); gnlProkkaLFDOHPGH_51 (original name was: gnl|Prokka|LFDOHPGH_51); gnlProkkaLFDOHPGH_52 (original name was: gnl|Prokka|LFDOHPGH_52); gnlProkkaLFDOHPGH_54 (original name was: gnl|Prokka|LFDOHPGH_54); gnlProkkaLFDOHPGH_75 (original name was: gnl|Prokka|LFDOHPGH_75); gnlProkkaLFDOHPGH_86 (original name was: gnl|Prokka|LFDOHPGH_86); gnlProkkaLFDOHPGH_97 (original name was: gnl|Prokka|LFDOHPGH_97); gnlProkkaLFDOHPGH_108 (original name was: gnl|Prokka|LFDOHPGH_108)

Compact view

gnlProkkaLFDOHPGH_31 - Region 1 - RiPP-like

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Location: 146,387 - 157,577 nt. (total: 11,191 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLFDOHPGH_53 - Region 1 - lanthipeptide-class-iv

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Location: 15,908 - 38,103 nt. (total: 22,196 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaLFDOHPGH_64 - Region 1 - lanthipeptide-class-iii

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Location: 64,292 - 86,793 nt. (total: 22,502 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.