Select genomic region:
Overview
24.1
45.1
48.1
95.1
155.1
194.1
217.1

### Identified primary metabolite regions

c00024_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_24)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 24.1 | Rnf_complex | E-MGC | 1 | 13,541 | Rnf complex C. sporogenes | RNF | 100%

c00045_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_45)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 45.1 | Pyruvate2acetate-formate | SCFA | 1 | 10,954 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00048_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_48)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 48.1 | gallic_acid_met | Aromatic | 1 | 10,663 | Gallic acid degradation B. sp. KLE | GALL | 100%

c00095_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_95)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 95.1 | Others_HGD_unassigned | Putative | 1 | 19,675 |

c00155_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_155)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 155.1 | Putrescine2spermidine | Aliphatic_amine | 4,864 | 21,789 | Putrescine2spermidine E. rectale | SPRM | 100%

c00194_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_194)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 194.1 | succinate2propionate | SCFA | 1 | 17,863 | Succinate to propionate B. theta | PRO | 33%

c00217_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_217)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 217.1 | acetate2butyrate | SCFA | 820 | 16,229 | Acetate to butyrate C. sporogenes | BUT | 83%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 24.1 | Rnf_complex | E-MGC | 1 | 13,541 | Rnf complex C. sporogenes | RNF | 100%
Region 45.1 | Pyruvate2acetate-formate | SCFA | 1 | 10,954 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 48.1 | gallic_acid_met | Aromatic | 1 | 10,663 | Gallic acid degradation B. sp. KLE | GALL | 100%
Region 95.1 | Others_HGD_unassigned | Putative | 1 | 19,675 |
Region 155.1 | Putrescine2spermidine | Aliphatic_amine | 4,864 | 21,789 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 194.1 | succinate2propionate | SCFA | 1 | 17,863 | Succinate to propionate B. theta | PRO | 33%
Region 217.1 | acetate2butyrate | SCFA | 820 | 16,229 | Acetate to butyrate C. sporogenes | BUT | 83%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_23)
  c00025_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_44)
  c00046_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_47)
  c00049_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_94)
  c00096_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_154)
  c00156_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_184)
  c00185_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_185)
  c00186_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_186)
  c00187_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_187)
  c00188_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_188)
  c00189_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_189)
  c00190_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_190)
  c00191_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_191)
  c00192_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_192)
  c00193_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_193)
  c00195_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_195)
  c00196_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_196)
  c00197_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_197)
  c00198_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_198)
  c00199_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_199)
  c00200_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_200)
  c00201_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_201)
  c00202_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_202)
  c00203_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_203)
  c00204_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_204)
  c00205_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_205)
  c00206_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_206)
  c00207_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_207)
  c00208_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_208)
  c00209_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_209)
  c00210_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_210)
  c00211_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_211)
  c00212_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_212)
  c00213_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_213)
  c00214_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_214)
  c00215_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_215)
  c00216_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_216)
  c00218_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_218)
  c00219_gnlPro.. (original name was: gnl|Prokka|LANLAPFM_219)

Compact view
c00024_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,541 nt. (total: 13,541 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00045_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 10,954 nt. (total: 10,954 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00048_gnlPro.. - Region 1 - gallic_acid_met
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 10,663 nt. (total: 10,663 nt) Show pHMM detection rules used
Region on contig edge.
gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00095_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 19,675 nt. (total: 19,675 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00155_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 4,864 - 21,789 nt. (total: 16,926 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00194_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,863 nt. (total: 17,863 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00217_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 820 - 16,229 nt. (total: 15,410 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.