GCA_022510025.2 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPGIIAEPB_12 (original name was: gnl|Prokka|PGIIAEPB_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	352,227	364,377

gnlProkkaPGIIAEPB_31 (original name was: gnl|Prokka|PGIIAEPB_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	cyclic-lactone-autoinducer	227,071	247,776

gnlProkkaPGIIAEPB_33 (original name was: gnl|Prokka|PGIIAEPB_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	T3PKS	78,337	119,506

gnlProkkaPGIIAEPB_34 (original name was: gnl|Prokka|PGIIAEPB_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	terpene	77,059	92,592

Region	Type	From	To	Similarity
Region 12.1	RiPP-like	352,227	364,377
Region 24.1	cyclic-lactone-autoinducer	227,071	247,776
Region 26.1	T3PKS	78,337	119,506
Region 27.1	terpene	77,059	92,592

No secondary metabolite regions were found in these records:: gnlProkkaPGIIAEPB_1 (original name was: gnl|Prokka|PGIIAEPB_1); gnlProkkaPGIIAEPB_2 (original name was: gnl|Prokka|PGIIAEPB_2); gnlProkkaPGIIAEPB_3 (original name was: gnl|Prokka|PGIIAEPB_3); gnlProkkaPGIIAEPB_4 (original name was: gnl|Prokka|PGIIAEPB_4); gnlProkkaPGIIAEPB_5 (original name was: gnl|Prokka|PGIIAEPB_5); gnlProkkaPGIIAEPB_6 (original name was: gnl|Prokka|PGIIAEPB_6); gnlProkkaPGIIAEPB_7 (original name was: gnl|Prokka|PGIIAEPB_7); gnlProkkaPGIIAEPB_8 (original name was: gnl|Prokka|PGIIAEPB_8); gnlProkkaPGIIAEPB_9 (original name was: gnl|Prokka|PGIIAEPB_9); gnlProkkaPGIIAEPB_10 (original name was: gnl|Prokka|PGIIAEPB_10); gnlProkkaPGIIAEPB_11 (original name was: gnl|Prokka|PGIIAEPB_11); gnlProkkaPGIIAEPB_13 (original name was: gnl|Prokka|PGIIAEPB_13); gnlProkkaPGIIAEPB_14 (original name was: gnl|Prokka|PGIIAEPB_14); gnlProkkaPGIIAEPB_15 (original name was: gnl|Prokka|PGIIAEPB_15); gnlProkkaPGIIAEPB_16 (original name was: gnl|Prokka|PGIIAEPB_16); gnlProkkaPGIIAEPB_17 (original name was: gnl|Prokka|PGIIAEPB_17); gnlProkkaPGIIAEPB_18 (original name was: gnl|Prokka|PGIIAEPB_18); gnlProkkaPGIIAEPB_19 (original name was: gnl|Prokka|PGIIAEPB_19); gnlProkkaPGIIAEPB_20 (original name was: gnl|Prokka|PGIIAEPB_20); gnlProkkaPGIIAEPB_21 (original name was: gnl|Prokka|PGIIAEPB_21); gnlProkkaPGIIAEPB_23 (original name was: gnl|Prokka|PGIIAEPB_23); gnlProkkaPGIIAEPB_30 (original name was: gnl|Prokka|PGIIAEPB_30); gnlProkkaPGIIAEPB_32 (original name was: gnl|Prokka|PGIIAEPB_32); gnlProkkaPGIIAEPB_35 (original name was: gnl|Prokka|PGIIAEPB_35)

Compact view

gnlProkkaPGIIAEPB_12 - Region 1 - RiPP-like

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Location: 352,227 - 364,377 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPGIIAEPB_31 - Region 1 - cyclic-lactone-autoinducer

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Location: 227,071 - 247,776 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPGIIAEPB_33 - Region 1 - T3PKS

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Location: 78,337 - 119,506 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPGIIAEPB_34 - Region 1 - terpene

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Location: 77,059 - 92,592 nt. (total: 15,534 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.