GCA_022714305.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJACICNEM_23 (original name was: gnl|Prokka|JACICNEM_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS-like	22,125	64,554

gnlProkkaJACICNEM_44 (original name was: gnl|Prokka|JACICNEM_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	RRE-containing	23,266	43,619	polysaccharide C	Saccharide	28%

Region	Type	From	To	Most similar known cluster	Similarity
Region 23.1	NRPS-like	22,125	64,554
Region 44.1	RRE-containing	23,266	43,619	polysaccharide C	Saccharide	28%

No secondary metabolite regions were found in these records:: gnlProkkaJACICNEM_1 (original name was: gnl|Prokka|JACICNEM_1); gnlProkkaJACICNEM_2 (original name was: gnl|Prokka|JACICNEM_2); gnlProkkaJACICNEM_3 (original name was: gnl|Prokka|JACICNEM_3); gnlProkkaJACICNEM_4 (original name was: gnl|Prokka|JACICNEM_4); gnlProkkaJACICNEM_5 (original name was: gnl|Prokka|JACICNEM_5); gnlProkkaJACICNEM_6 (original name was: gnl|Prokka|JACICNEM_6); gnlProkkaJACICNEM_7 (original name was: gnl|Prokka|JACICNEM_7); gnlProkkaJACICNEM_8 (original name was: gnl|Prokka|JACICNEM_8); gnlProkkaJACICNEM_9 (original name was: gnl|Prokka|JACICNEM_9); gnlProkkaJACICNEM_10 (original name was: gnl|Prokka|JACICNEM_10); gnlProkkaJACICNEM_11 (original name was: gnl|Prokka|JACICNEM_11); gnlProkkaJACICNEM_12 (original name was: gnl|Prokka|JACICNEM_12); gnlProkkaJACICNEM_13 (original name was: gnl|Prokka|JACICNEM_13); gnlProkkaJACICNEM_14 (original name was: gnl|Prokka|JACICNEM_14); gnlProkkaJACICNEM_15 (original name was: gnl|Prokka|JACICNEM_15); gnlProkkaJACICNEM_16 (original name was: gnl|Prokka|JACICNEM_16); gnlProkkaJACICNEM_17 (original name was: gnl|Prokka|JACICNEM_17); gnlProkkaJACICNEM_18 (original name was: gnl|Prokka|JACICNEM_18); gnlProkkaJACICNEM_19 (original name was: gnl|Prokka|JACICNEM_19); gnlProkkaJACICNEM_20 (original name was: gnl|Prokka|JACICNEM_20); gnlProkkaJACICNEM_21 (original name was: gnl|Prokka|JACICNEM_21); gnlProkkaJACICNEM_22 (original name was: gnl|Prokka|JACICNEM_22); gnlProkkaJACICNEM_24 (original name was: gnl|Prokka|JACICNEM_24); gnlProkkaJACICNEM_25 (original name was: gnl|Prokka|JACICNEM_25); gnlProkkaJACICNEM_26 (original name was: gnl|Prokka|JACICNEM_26); gnlProkkaJACICNEM_27 (original name was: gnl|Prokka|JACICNEM_27); gnlProkkaJACICNEM_28 (original name was: gnl|Prokka|JACICNEM_28); gnlProkkaJACICNEM_29 (original name was: gnl|Prokka|JACICNEM_29); gnlProkkaJACICNEM_30 (original name was: gnl|Prokka|JACICNEM_30); gnlProkkaJACICNEM_31 (original name was: gnl|Prokka|JACICNEM_31); gnlProkkaJACICNEM_32 (original name was: gnl|Prokka|JACICNEM_32); gnlProkkaJACICNEM_33 (original name was: gnl|Prokka|JACICNEM_33); gnlProkkaJACICNEM_34 (original name was: gnl|Prokka|JACICNEM_34); gnlProkkaJACICNEM_35 (original name was: gnl|Prokka|JACICNEM_35); gnlProkkaJACICNEM_36 (original name was: gnl|Prokka|JACICNEM_36); gnlProkkaJACICNEM_37 (original name was: gnl|Prokka|JACICNEM_37); gnlProkkaJACICNEM_38 (original name was: gnl|Prokka|JACICNEM_38); gnlProkkaJACICNEM_39 (original name was: gnl|Prokka|JACICNEM_39); gnlProkkaJACICNEM_40 (original name was: gnl|Prokka|JACICNEM_40); gnlProkkaJACICNEM_41 (original name was: gnl|Prokka|JACICNEM_41); gnlProkkaJACICNEM_42 (original name was: gnl|Prokka|JACICNEM_42); gnlProkkaJACICNEM_43 (original name was: gnl|Prokka|JACICNEM_43); gnlProkkaJACICNEM_45 (original name was: gnl|Prokka|JACICNEM_45); gnlProkkaJACICNEM_46 (original name was: gnl|Prokka|JACICNEM_46); gnlProkkaJACICNEM_47 (original name was: gnl|Prokka|JACICNEM_47); gnlProkkaJACICNEM_48 (original name was: gnl|Prokka|JACICNEM_48); gnlProkkaJACICNEM_49 (original name was: gnl|Prokka|JACICNEM_49); gnlProkkaJACICNEM_50 (original name was: gnl|Prokka|JACICNEM_50); gnlProkkaJACICNEM_51 (original name was: gnl|Prokka|JACICNEM_51); gnlProkkaJACICNEM_52 (original name was: gnl|Prokka|JACICNEM_52); gnlProkkaJACICNEM_53 (original name was: gnl|Prokka|JACICNEM_53); gnlProkkaJACICNEM_54 (original name was: gnl|Prokka|JACICNEM_54); gnlProkkaJACICNEM_55 (original name was: gnl|Prokka|JACICNEM_55); gnlProkkaJACICNEM_56 (original name was: gnl|Prokka|JACICNEM_56); gnlProkkaJACICNEM_57 (original name was: gnl|Prokka|JACICNEM_57); gnlProkkaJACICNEM_58 (original name was: gnl|Prokka|JACICNEM_58); gnlProkkaJACICNEM_59 (original name was: gnl|Prokka|JACICNEM_59); gnlProkkaJACICNEM_60 (original name was: gnl|Prokka|JACICNEM_60); gnlProkkaJACICNEM_61 (original name was: gnl|Prokka|JACICNEM_61); gnlProkkaJACICNEM_62 (original name was: gnl|Prokka|JACICNEM_62); gnlProkkaJACICNEM_63 (original name was: gnl|Prokka|JACICNEM_63); gnlProkkaJACICNEM_64 (original name was: gnl|Prokka|JACICNEM_64); gnlProkkaJACICNEM_65 (original name was: gnl|Prokka|JACICNEM_65); gnlProkkaJACICNEM_66 (original name was: gnl|Prokka|JACICNEM_66); gnlProkkaJACICNEM_67 (original name was: gnl|Prokka|JACICNEM_67); gnlProkkaJACICNEM_68 (original name was: gnl|Prokka|JACICNEM_68); gnlProkkaJACICNEM_69 (original name was: gnl|Prokka|JACICNEM_69); gnlProkkaJACICNEM_70 (original name was: gnl|Prokka|JACICNEM_70)

Compact view

gnlProkkaJACICNEM_23 - Region 1 - NRPS-like

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Location: 22,125 - 64,554 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 22124 - 64554:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg23_50

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaJACICNEM_44 - Region 1 - RRE-containing

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Location: 23,266 - 43,619 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1