GCA_022735475.1 - 6 region(s)

Identified primary metabolite regions

c00011_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	succinate2propionate	SCFA	9,375	33,902	Succinate to propionate B. theta	PRO	50%

c00016_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Rnf_complex	E-MGC	27,758	52,818	Rnf complex C. sporogenes	RNF	83%

c00055_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Pyruvate2acetate-formate	SCFA	5,502	18,610	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00059_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_59)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	Fumarate2succinate	SCFA	12,751	36,215	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00126_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_126)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 126.1	porA	SCFA	34,986	57,821	porA C. sporogenes	POR	60%

c00190_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_190)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 190.1	TPP_AA_metabolism	Putative	118,647	134,808

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_1); c00002_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_2); c00003_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_3); c00004_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_4); c00005_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_5); c00006_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_6); c00007_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_7); c00008_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_8); c00009_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_9); c00010_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_10); c00012_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_12); c00013_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_13); c00014_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_14); c00015_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_15); c00017_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_17); c00018_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_18); c00019_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_19); c00020_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_20); c00021_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_21); c00022_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_22); c00023_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_23); c00024_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_24); c00025_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_25); c00026_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_26); c00027_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_27); c00028_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_28); c00029_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_29); c00030_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_30); c00031_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_31); c00032_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_32); c00033_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_33); c00034_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_34); c00035_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_35); c00036_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_36); c00037_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_37); c00038_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_38); c00039_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_39); c00040_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_40); c00041_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_41); c00042_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_42); c00043_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_43); c00044_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_44); c00045_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_45); c00046_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_46); c00047_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_47); c00048_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_48); c00049_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_49); c00050_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_50); c00051_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_51); c00052_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_52); c00053_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_53); c00054_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_54); c00056_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_56); c00057_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_57); c00058_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_58); c00060_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_60); c00061_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_61); c00062_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_62); c00063_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_63); c00064_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_64); c00065_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_65); c00066_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_66); c00067_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_67); c00068_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_68); c00069_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_69); c00070_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_70); c00071_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_71); c00072_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_72); c00073_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_73); c00074_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_74); c00075_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_75); c00076_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_76); c00077_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_77); c00078_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_78); c00079_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_79); c00080_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_80); c00081_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_81); c00082_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_82); c00083_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_83); c00084_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_84); c00085_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_85); c00086_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_86); c00087_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_87); c00088_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_88); c00089_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_89); c00090_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_90); c00091_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_91); c00092_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_92); c00093_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_93); c00094_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_94); c00095_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_95); c00096_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_96); c00097_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_97); c00098_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_98); c00099_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_99); c00100_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_100); c00101_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_101); c00102_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_102); c00103_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_103); c00104_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_104); c00105_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_105); c00106_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_106); c00107_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_107); c00108_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_108); c00109_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_109); c00110_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_110); c00111_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_111); c00112_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_112); c00113_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_113); c00114_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_114); c00115_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_115); c00116_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_116); c00117_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_117); c00118_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_118); c00119_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_119); c00120_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_120); c00121_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_121); c00122_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_122); c00123_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_123); c00124_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_124); c00125_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_125); c00127_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_127); c00128_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_128); c00129_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_129); c00130_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_130); c00131_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_131); c00132_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_132); c00133_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_133); c00134_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_134); c00135_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_135); c00136_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_136); c00137_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_137); c00138_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_138); c00139_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_139); c00140_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_140); c00141_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_141); c00142_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_142); c00143_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_143); c00144_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_144); c00145_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_145); c00146_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_146); c00147_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_147); c00148_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_148); c00149_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_149); c00150_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_150); c00151_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_151); c00152_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_152); c00153_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_153); c00154_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_154); c00155_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_155); c00156_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_156); c00157_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_157); c00158_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_158); c00159_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_159); c00160_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_160); c00161_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_161); c00162_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_162); c00163_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_163); c00164_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_164); c00165_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_165); c00166_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_166); c00167_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_167); c00168_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_168); c00169_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_169); c00170_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_170); c00171_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_171); c00172_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_172); c00173_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_173); c00174_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_174); c00175_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_175); c00176_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_176); c00177_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_177); c00178_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_178); c00179_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_179); c00180_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_180); c00181_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_181); c00182_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_182); c00183_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_183); c00184_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_184); c00185_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_185); c00186_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_186); c00187_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_187); c00188_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_188); c00189_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_189); c00191_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_191); c00192_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_192); c00193_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_193); c00194_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_194); c00195_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_195); c00196_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_196); c00197_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_197); c00198_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_198); c00199_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_199); c00200_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_200); c00201_gnlPro.. (original name was: gnl|Prokka|LHJHHAFO_201)

Compact view

c00011_gnlPro.. - Region 1 - succinate2propionate

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Location: 9,375 - 33,902 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00016_gnlPro.. - Region 1 - Rnf_complex

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Location: 27,758 - 52,818 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00055_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 5,502 - 18,610 nt. (total: 13,109 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00059_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 12,751 - 36,215 nt. (total: 23,465 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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c00126_gnlPro.. - Region 1 - porA

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Location: 34,986 - 57,821 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00190_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 118,647 - 134,808 nt. (total: 16,162 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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