Select genomic region:
Overview
1.1
48.1
52.1
55.1
63.1
66.1
96.1
99.1
116.1
132.1

### Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_1)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | TPP_AA_metabolism | Putative | 149,022 | 175,117 |

c00048_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_48)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 48.1 | Others_HGD_unassigned | Putative | 23,799 | 38,675 |

c00052_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_52)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 52.1 | Rnf_complex | E-MGC | 1 | 23,556 | Rnf complex C. sporogenes | RNF | 83%

c00055_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_55)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 55.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,311 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

c00063_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_63)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 63.1 | porA | SCFA | 35,255 | 58,097 | porA C. sporogenes | POR | 60%

c00066_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_66)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 66.1 | succinate2propionate | SCFA | 11,000 | 32,348 | Succinate to propionate B. theta | PRO | 75%

c00096_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_96)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 96.1 | PFOR_II_pathway | SCFA | 79,545 | 92,953 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00099_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_99)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 99.1 | Fumarate2succinate | SCFA | 1 | 3,111 | Fumarate to succinate B. thetaiotaomicron | SUC | 66%

c00116_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_116)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 116.1 | TPP_fatty_acids | Putative | 1,466 | 18,761 |

c00132_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_132)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 132.1 | fatty_acids-unassigned | Putative | 71,240 | 101,764 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | TPP_AA_metabolism | Putative | 149,022 | 175,117 |
Region 48.1 | Others_HGD_unassigned | Putative | 23,799 | 38,675 |
Region 52.1 | Rnf_complex | E-MGC | 1 | 23,556 | Rnf complex C. sporogenes | RNF | 83%
Region 55.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,311 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 63.1 | porA | SCFA | 35,255 | 58,097 | porA C. sporogenes | POR | 60%
Region 66.1 | succinate2propionate | SCFA | 11,000 | 32,348 | Succinate to propionate B. theta | PRO | 75%
Region 96.1 | PFOR_II_pathway | SCFA | 79,545 | 92,953 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 99.1 | Fumarate2succinate | SCFA | 1 | 3,111 | Fumarate to succinate B. thetaiotaomicron | SUC | 66%
Region 116.1 | TPP_fatty_acids | Putative | 1,466 | 18,761 |
Region 132.1 | fatty_acids-unassigned | Putative | 71,240 | 101,764 |

No primary metabolite regions were found in these records:
  c00002_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_47)
  c00049_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_51)
  c00053_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_54)
  c00056_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_62)
  c00064_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_65)
  c00067_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_95)
  c00097_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_98)
  c00100_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_115)
  c00117_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_131)
  c00133_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_184)
  c00185_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_185)
  c00186_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_186)
  c00187_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_187)
  c00188_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_188)
  c00189_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_189)
  c00190_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_190)
  c00191_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_191)
  c00192_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_192)
  c00193_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_193)
  c00194_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_194)
  c00195_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_195)
  c00196_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_196)
  c00197_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_197)
  c00198_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_198)
  c00199_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_199)
  c00200_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_200)
  c00201_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_201)
  c00202_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_202)
  c00203_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_203)
  c00204_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_204)
  c00205_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_205)
  c00206_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_206)
  c00207_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_207)
  c00208_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_208)
  c00209_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_209)
  c00210_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_210)
  c00211_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_211)
  c00212_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_212)
  c00213_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_213)
  c00214_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_214)
  c00215_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_215)
  c00216_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_216)
  c00217_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_217)
  c00218_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_218)
  c00219_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_219)
  c00220_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_220)
  c00221_gnlPro.. (original name was: gnl|Prokka|BBKNCJAN_221)

Compact view
c00001_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 149,022 - 175,117 nt. (total: 26,096 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00048_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 23,799 - 38,675 nt. (total: 14,877 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00052_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,556 nt. (total: 23,556 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00055_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,311 nt. (total: 13,311 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00063_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 35,255 - 58,097 nt. (total: 22,843 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00066_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 11,000 - 32,348 nt. (total: 21,349 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00096_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 79,545 - 92,953 nt. (total: 13,409 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00099_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 3,111 nt. (total: 3,111 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00116_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,466 - 18,761 nt. (total: 17,296 nt) Show pHMM detection rules used
Region on contig edge.
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00132_gnlPro.. - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 71,240 - 101,764 nt. (total: 30,525 nt) Show pHMM detection rules used
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.