GCA_022801075.1 - 9 region(s)

Identified primary metabolite regions

c00008_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	PFOR_II_pathway	SCFA	1	13,472	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00016_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	porA	SCFA	1	16,267	porA C. sporogenes	POR	60%

c00030_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_30)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	NADH_dehydrogenase_I	E-MGC	13,075	43,275	NADH dehydrogenase I Bacteroides sp.	NADHD	66%

c00116_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_116)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 116.1	succinate2propionate	SCFA	1	16,196	Succinate to propionate B. theta	PRO	58%

c00126_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_126)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 126.1	Rnf_complex	E-MGC	46,389	71,639	Rnf complex C. sporogenes	RNF	83%

c00128_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_128)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 128.1	TPP_AA_metabolism	Putative	1	17,350

c00130_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_130)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 130.1	Fumarate2succinate	SCFA	1	12,773	Fumarate to succinate B. thetaiotaomicron	SUC	66%

c00147_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_147)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 147.1	TPP_fatty_acids	Putative	781	25,640
Region 147.2	Pyruvate2acetate-formate	SCFA	56,792	70,098	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_1); c00002_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_2); c00003_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_3); c00004_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_4); c00005_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_5); c00006_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_6); c00007_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_7); c00009_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_9); c00010_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_10); c00011_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_11); c00012_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_12); c00013_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_13); c00014_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_14); c00015_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_15); c00017_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_17); c00018_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_18); c00019_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_19); c00020_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_20); c00021_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_21); c00022_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_22); c00023_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_23); c00024_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_24); c00025_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_25); c00026_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_26); c00027_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_27); c00028_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_28); c00029_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_29); c00031_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_31); c00032_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_32); c00033_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_33); c00034_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_34); c00035_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_35); c00036_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_36); c00037_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_37); c00038_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_38); c00039_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_39); c00040_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_40); c00041_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_41); c00042_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_42); c00043_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_43); c00044_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_44); c00045_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_45); c00046_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_46); c00047_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_47); c00048_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_48); c00049_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_49); c00050_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_50); c00051_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_51); c00052_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_52); c00053_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_53); c00054_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_54); c00055_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_55); c00056_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_56); c00057_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_57); c00058_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_58); c00059_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_59); c00060_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_60); c00061_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_61); c00062_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_62); c00063_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_63); c00064_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_64); c00065_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_65); c00066_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_66); c00067_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_67); c00068_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_68); c00069_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_69); c00070_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_70); c00071_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_71); c00072_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_72); c00073_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_73); c00074_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_74); c00075_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_75); c00076_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_76); c00077_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_77); c00078_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_78); c00079_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_79); c00080_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_80); c00081_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_81); c00082_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_82); c00083_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_83); c00084_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_84); c00085_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_85); c00086_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_86); c00087_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_87); c00088_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_88); c00089_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_89); c00090_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_90); c00091_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_91); c00092_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_92); c00093_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_93); c00094_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_94); c00095_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_95); c00096_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_96); c00097_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_97); c00098_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_98); c00099_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_99); c00100_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_100); c00101_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_101); c00102_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_102); c00103_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_103); c00104_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_104); c00105_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_105); c00106_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_106); c00107_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_107); c00108_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_108); c00109_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_109); c00110_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_110); c00111_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_111); c00112_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_112); c00113_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_113); c00114_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_114); c00115_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_115); c00117_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_117); c00118_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_118); c00119_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_119); c00120_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_120); c00121_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_121); c00122_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_122); c00123_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_123); c00124_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_124); c00125_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_125); c00127_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_127); c00129_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_129); c00131_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_131); c00132_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_132); c00133_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_133); c00134_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_134); c00135_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_135); c00136_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_136); c00137_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_137); c00138_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_138); c00139_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_139); c00140_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_140); c00141_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_141); c00142_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_142); c00143_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_143); c00144_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_144); c00145_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_145); c00146_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_146); c00148_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_148); c00149_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_149); c00150_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_150); c00151_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_151); c00152_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_152); c00153_gnlPro.. (original name was: gnl|Prokka|PBPAGIDJ_153)

Compact view

c00008_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 1 - 13,472 nt. (total: 13,472 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00016_gnlPro.. - Region 1 - porA

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Location: 1 - 16,267 nt. (total: 16,267 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00030_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 13,075 - 43,275 nt. (total: 30,201 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00116_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 16,196 nt. (total: 16,196 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00126_gnlPro.. - Region 1 - Rnf_complex

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Location: 46,389 - 71,639 nt. (total: 25,251 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00128_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 17,350 nt. (total: 17,350 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00130_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 12,773 nt. (total: 12,773 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

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c00147_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 781 - 25,640 nt. (total: 24,860 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00147_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 56,792 - 70,098 nt. (total: 13,307 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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