GCA_023668505.1 - 7 region(s)

Identified primary metabolite regions

c00012_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	1	14,642	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00015_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	8,766	31,721	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00018_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	NADH_dehydrogenase_I	E-MGC	11,300	41,531	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00022_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Rnf_complex	E-MGC	81,215	106,449	Rnf complex C. sporogenes	RNF	83%

c00023_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	TPP_AA_metabolism	Putative	29,393	54,629

c00044_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	succinate2propionate	SCFA	14,194	38,806	Succinate to propionate B. theta	PRO	75%
Region 44.2	porA	SCFA	119,934	142,777	porA C. sporogenes	POR	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_1); c00002_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_2); c00003_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_3); c00004_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_4); c00005_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_5); c00006_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_6); c00007_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_7); c00008_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_8); c00009_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_9); c00010_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_10); c00011_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_11); c00013_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_13); c00014_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_14); c00016_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_16); c00017_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_17); c00019_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_19); c00020_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_20); c00021_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_21); c00024_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_24); c00025_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_25); c00026_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_26); c00027_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_27); c00028_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_28); c00029_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_29); c00030_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_30); c00031_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_31); c00032_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_32); c00033_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_33); c00034_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_34); c00035_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_35); c00036_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_36); c00037_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_37); c00038_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_38); c00039_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_39); c00040_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_40); c00041_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_41); c00042_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_42); c00043_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_43); c00045_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_45); c00046_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_46); c00047_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_47); c00048_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_48); c00049_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_49); c00050_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_50); c00051_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_51); c00052_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_52); c00053_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_53); c00054_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_54); c00055_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_55); c00056_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_56); c00057_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_57); c00058_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_58); c00059_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_66); c00060_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_70); c00061_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_71); c00062_gnlPro.. (original name was: gnl|Prokka|LNAMMEPN_72)

Compact view

c00012_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 14,642 nt. (total: 14,642 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00015_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 8,766 - 31,721 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00018_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 11,300 - 41,531 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00022_gnlPro.. - Region 1 - Rnf_complex

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Location: 81,215 - 106,449 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00023_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 29,393 - 54,629 nt. (total: 25,237 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00044_gnlPro.. - Region 1 - succinate2propionate

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Location: 14,194 - 38,806 nt. (total: 24,613 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00044_gnlPro.. - Region 2 - porA

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Location: 119,934 - 142,777 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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