GCA_024125105.1 - 8 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	succinate2propionate	SCFA	175,766	202,678	Succinate to propionate A. sp. KLE1797	SUC	57%

c00008_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	NADH_dehydrogenase_I	E-MGC	16,294	46,289	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00011_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Pyruvate2acetate-formate	SCFA	84,462	107,511	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00012_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	OD_fatty_acids	Putative	58,667	83,466

c00013_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	46,944	72,059	Rnf complex C. sporogenes	RNF	83%

c00016_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Fumarate2succinate	SCFA	38,258	61,718	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00021_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	porA	SCFA	39,199	61,127	porA C. sporogenes	POR	60%

c00024_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	TPP_AA_metabolism	Putative	4,947	33,278

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_1); c00002_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_2); c00004_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_4); c00005_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_5); c00006_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_6); c00007_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_7); c00009_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_9); c00010_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_10); c00014_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_14); c00015_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_15); c00017_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_17); c00018_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_18); c00019_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_19); c00020_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_20); c00022_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_22); c00023_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_23); c00025_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_25); c00026_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_26); c00027_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_27); c00028_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_28); c00029_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_29); c00030_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_30); c00031_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_31); c00032_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_32); c00033_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_33); c00034_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_34); c00035_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_35); c00036_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_36); c00037_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_37); c00038_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_38); c00039_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_39); c00040_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_40); c00041_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_41); c00042_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_42); c00043_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_43); c00044_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_44); c00045_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_45); c00046_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_46); c00047_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_47); c00048_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_48); c00049_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_49); c00050_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_50); c00051_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_51); c00052_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_52); c00053_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_53); c00054_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_54); c00055_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_55); c00056_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_56); c00057_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_57); c00058_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_58); c00059_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_59); c00060_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_60); c00061_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_61); c00062_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_62); c00063_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_63); c00064_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_64); c00065_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_65); c00066_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_66); c00067_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_67); c00068_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_68); c00069_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_69); c00070_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_70); c00071_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_71); c00072_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_72); c00073_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_73); c00074_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_74); c00075_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_75); c00076_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_76); c00077_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_77); c00078_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_78); c00079_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_79); c00080_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_80); c00081_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_81); c00082_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_82); c00083_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_83); c00084_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_84); c00085_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_85); c00086_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_86); c00087_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_87); c00088_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_88); c00089_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_89); c00090_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_90); c00091_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_91); c00092_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_92); c00093_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_93); c00094_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_94); c00095_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_95); c00096_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_96); c00097_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_97); c00098_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_98); c00099_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_99); c00100_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_100); c00101_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_101); c00102_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_102); c00103_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_103); c00104_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_104); c00105_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_105); c00106_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_106); c00107_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_107); c00108_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_108); c00109_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_109); c00110_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_110); c00111_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_111); c00112_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_112); c00113_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_113); c00114_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_114); c00115_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_115); c00116_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_116); c00117_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_117); c00118_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_118); c00119_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_119); c00120_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_120); c00121_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_121); c00122_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_122); c00123_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_123); c00124_gnlPro.. (original name was: gnl|Prokka|JEHBGMHF_124)

Compact view

c00003_gnlPro.. - Region 1 - succinate2propionate

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Location: 175,766 - 202,678 nt. (total: 26,913 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00008_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 16,294 - 46,289 nt. (total: 29,996 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00011_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 84,462 - 107,511 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00012_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 58,667 - 83,466 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00013_gnlPro.. - Region 1 - Rnf_complex

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Location: 46,944 - 72,059 nt. (total: 25,116 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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c00016_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 38,258 - 61,718 nt. (total: 23,461 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00021_gnlPro.. - Region 1 - porA

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Location: 39,199 - 61,127 nt. (total: 21,929 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00024_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 4,947 - 33,278 nt. (total: 28,332 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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