GCA_024462315.1 - 9 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	368,005	393,332	Rnf complex C. sporogenes	RNF	83%

c00002_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	OD_fatty_acids	Putative	46,285	71,084

c00004_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	porA	SCFA	87,566	110,212	porA C. sporogenes	POR	60%

c00006_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	succinate2propionate	SCFA	2,980	29,892	Succinate to propionate B. theta	PRO	41%

c00007_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_57)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate	SCFA	34,430	57,845	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00023_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_136)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	TPP_AA_metabolism	Putative	154,028	182,360

c00045_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_158)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Pyruvate2acetate-formate	SCFA	84,680	107,730	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00064_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_180)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	Putrescine2spermidine	Aliphatic_amine	130,557	153,314	Arginine2putrescine R. gnavus	PUTR	40%

c00066_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_202)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	NADH_dehydrogenase_I	E-MGC	44,241	74,236	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

No primary metabolite regions were found in these records:: c00003_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_13); c00005_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_35); c00008_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_68); c00009_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_79); c00010_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_90); c00011_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_101); c00012_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_112); c00013_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_113); c00014_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_124); c00015_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_128); c00016_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_129); c00017_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_130); c00018_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_131); c00019_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_132); c00020_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_133); c00021_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_134); c00022_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_135); c00024_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_137); c00025_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_138); c00026_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_139); c00027_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_140); c00028_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_141); c00029_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_142); c00030_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_143); c00031_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_144); c00032_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_145); c00033_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_146); c00034_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_147); c00035_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_148); c00036_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_149); c00037_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_150); c00038_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_151); c00039_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_152); c00040_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_153); c00041_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_154); c00042_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_155); c00043_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_156); c00044_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_157); c00046_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_159); c00047_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_160); c00048_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_161); c00049_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_162); c00050_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_163); c00051_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_164); c00052_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_165); c00053_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_166); c00054_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_167); c00055_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_168); c00056_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_169); c00057_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_170); c00058_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_171); c00059_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_172); c00060_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_173); c00061_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_174); c00062_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_175); c00063_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_176); c00065_gnlPro.. (original name was: gnl|Prokka|JJKAAGEL_191)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex

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Location: 368,005 - 393,332 nt. (total: 25,328 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00002_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 46,285 - 71,084 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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No matches found.

c00004_gnlPro.. - Region 1 - porA

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Location: 87,566 - 110,212 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00006_gnlPro.. - Region 1 - succinate2propionate

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Location: 2,980 - 29,892 nt. (total: 26,913 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00007_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 34,430 - 57,845 nt. (total: 23,416 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00023_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 154,028 - 182,360 nt. (total: 28,333 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00045_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 84,680 - 107,730 nt. (total: 23,051 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00064_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 130,557 - 153,314 nt. (total: 22,758 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00066_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 44,241 - 74,236 nt. (total: 29,996 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

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regulatory genes

resistance genes

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