GCA_024462975.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	acetate2butyrate	SCFA	257,619	283,852	Acetate to butyrate C. sporogenes	BUT	100%

c00010_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_89)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_AA_metabolism	Putative	35,222	55,677	Threonine to propionate E. coli	PROP	20%

c00012_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_111)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Others_HGD_unassigned	Putative	11,695	42,682

c00023_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_222)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Putrescine2spermidine	Aliphatic_amine	4,354	28,596	Arginine2putrescine R. gnavus	PUTR	100%

c00034_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_332)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Rnf_complex	E-MGC	8,223	33,281	Rnf complex C. sporogenes	RNF	83%
Region 34.2	Pyruvate2acetate-formate	SCFA	51,475	74,466	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_2); c00003_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_13); c00004_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_24); c00005_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_35); c00006_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_46); c00007_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_57); c00008_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_68); c00009_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_79); c00011_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_100); c00013_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_112); c00014_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_123); c00015_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_134); c00016_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_145); c00017_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_156); c00018_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_167); c00019_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_178); c00020_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_189); c00021_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_200); c00022_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_211); c00024_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_223); c00025_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_234); c00026_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_244); c00027_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_255); c00028_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_266); c00029_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_277); c00030_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_288); c00031_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_299); c00032_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_310); c00033_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_321); c00035_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_333); c00036_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_343); c00037_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_354); c00038_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_365); c00039_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_376); c00040_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_387); c00041_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_398); c00042_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_409); c00043_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_420); c00044_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_431); c00045_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_442); c00046_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_443); c00047_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_453); c00048_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_464); c00049_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_475); c00050_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_486); c00051_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_497); c00052_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_508); c00053_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_519); c00054_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_530); c00055_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_541); c00056_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_552); c00057_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_553); c00058_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_660); c00059_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_671); c00060_gnlPro.. (original name was: gnl|Prokka|DLMJIIAF_682)

Compact view

c00001_gnlPro.. - Region 1 - acetate2butyrate

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Location: 257,619 - 283,852 nt. (total: 26,234 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00010_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 35,222 - 55,677 nt. (total: 20,456 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00012_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 11,695 - 42,682 nt. (total: 30,988 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00023_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 4,354 - 28,596 nt. (total: 24,243 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00034_gnlPro.. - Region 1 - Rnf_complex

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Location: 8,223 - 33,281 nt. (total: 25,059 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00034_gnlPro.. - Region 2 - Pyruvate2acetate-formate

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Location: 51,475 - 74,466 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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