GCA_024653455.1 - 10 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	hydroxybenzoate2phenol	Aromatic	5,858	27,860	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

c00006_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	histidine2glutamate_hutHGIU_operon	Other	33,403	58,812	Histidine to glutamate K. pneumoniae	GLU	60%

c00011_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	1	20,147

c00013_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	fatty_acids-unassigned	Putative	2,626	52,587

c00015_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	fatty_acids-unassigned	Putative	212	66,117

c00017_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	1	16,742	Acetate to butyrate C. sporogenes	BUT	33%

c00018_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	11,884	53,577	Nitrate reductase E. coli	NIR	60%

c00044_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	fatty_acids-unassigned	Putative	18,085	35,596	Acetate to butyrate C. sporogenes	BUT	50%

c00065_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_65)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	Fumarate2succinate	SCFA	1	19,238

c00069_gnlPro.. (original name was: gnl|Prokka|KGDADLMN_69)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	fatty_acids-unassigned	Putative	1	17,450

Compact view

c00005_gnlPro.. - Region 1 - hydroxybenzoate2phenol

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Location: 5,858 - 27,860 nt. (total: 22,003 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00006_gnlPro.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 33,403 - 58,812 nt. (total: 25,410 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00011_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 20,147 nt. (total: 20,147 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00013_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 2,626 - 52,587 nt. (total: 49,962 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00015_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 212 - 66,117 nt. (total: 65,906 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00017_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 16,742 nt. (total: 16,742 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00018_gnlPro.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 11,884 - 53,577 nt. (total: 41,694 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00044_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 18,085 - 35,596 nt. (total: 17,512 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00065_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 19,238 nt. (total: 19,238 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00069_gnlPro.. - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 1 - 17,450 nt. (total: 17,450 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.