GCA_025132835.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEOGNBIFH_8 (original name was: gnl|Prokka|EOGNBIFH_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RaS-RiPP	29,789	47,770

gnlProkkaEOGNBIFH_17 (original name was: gnl|Prokka|EOGNBIFH_17)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	NRPS-like	1	7,434

gnlProkkaEOGNBIFH_44 (original name was: gnl|Prokka|EOGNBIFH_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	lanthipeptide-class-i	1	20,801	lactocin S	RiPP:Lanthipeptide	10%

gnlProkkaEOGNBIFH_84 (original name was: gnl|Prokka|EOGNBIFH_84)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	RRE-containing	126,220	147,467

gnlProkkaEOGNBIFH_102 (original name was: gnl|Prokka|EOGNBIFH_102)

Region	Type	From	To	Most similar known cluster		Similarity
Region 66.1	RiPP-like	49,890	57,090

gnlProkkaEOGNBIFH_105 (original name was: gnl|Prokka|EOGNBIFH_105)

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	RiPP-like	1	6,857

gnlProkkaEOGNBIFH_136 (original name was: gnl|Prokka|EOGNBIFH_136)

Region	Type	From	To	Most similar known cluster		Similarity
Region 81.1	RaS-RiPP	1	17,037	streptide	RiPP	100%

Region	Type	From	To	Most similar known cluster	Similarity
Region 8.1	RaS-RiPP	29,789	47,770
Region 13.1	NRPS-like	1	7,434
Region 26.1	lanthipeptide-class-i	1	20,801	lactocin S	RiPP:Lanthipeptide	10%
Region 53.1	RRE-containing	126,220	147,467
Region 66.1	RiPP-like	49,890	57,090
Region 68.1	RiPP-like	1	6,857
Region 81.1	RaS-RiPP	1	17,037	streptide	RiPP	100%

No secondary metabolite regions were found in these records:: gnlProkkaEOGNBIFH_1 (original name was: gnl|Prokka|EOGNBIFH_1); gnlProkkaEOGNBIFH_2 (original name was: gnl|Prokka|EOGNBIFH_2); gnlProkkaEOGNBIFH_3 (original name was: gnl|Prokka|EOGNBIFH_3); gnlProkkaEOGNBIFH_4 (original name was: gnl|Prokka|EOGNBIFH_4); gnlProkkaEOGNBIFH_5 (original name was: gnl|Prokka|EOGNBIFH_5); gnlProkkaEOGNBIFH_6 (original name was: gnl|Prokka|EOGNBIFH_6); gnlProkkaEOGNBIFH_7 (original name was: gnl|Prokka|EOGNBIFH_7); gnlProkkaEOGNBIFH_9 (original name was: gnl|Prokka|EOGNBIFH_9); gnlProkkaEOGNBIFH_11 (original name was: gnl|Prokka|EOGNBIFH_11); gnlProkkaEOGNBIFH_12 (original name was: gnl|Prokka|EOGNBIFH_12); gnlProkkaEOGNBIFH_16 (original name was: gnl|Prokka|EOGNBIFH_16); gnlProkkaEOGNBIFH_18 (original name was: gnl|Prokka|EOGNBIFH_18); gnlProkkaEOGNBIFH_21 (original name was: gnl|Prokka|EOGNBIFH_21); gnlProkkaEOGNBIFH_22 (original name was: gnl|Prokka|EOGNBIFH_22); gnlProkkaEOGNBIFH_24 (original name was: gnl|Prokka|EOGNBIFH_24); gnlProkkaEOGNBIFH_25 (original name was: gnl|Prokka|EOGNBIFH_25); gnlProkkaEOGNBIFH_26 (original name was: gnl|Prokka|EOGNBIFH_26); gnlProkkaEOGNBIFH_27 (original name was: gnl|Prokka|EOGNBIFH_27); gnlProkkaEOGNBIFH_30 (original name was: gnl|Prokka|EOGNBIFH_30); gnlProkkaEOGNBIFH_32 (original name was: gnl|Prokka|EOGNBIFH_32); gnlProkkaEOGNBIFH_33 (original name was: gnl|Prokka|EOGNBIFH_33); gnlProkkaEOGNBIFH_35 (original name was: gnl|Prokka|EOGNBIFH_35); gnlProkkaEOGNBIFH_36 (original name was: gnl|Prokka|EOGNBIFH_36); gnlProkkaEOGNBIFH_46 (original name was: gnl|Prokka|EOGNBIFH_46); gnlProkkaEOGNBIFH_55 (original name was: gnl|Prokka|EOGNBIFH_55); gnlProkkaEOGNBIFH_60 (original name was: gnl|Prokka|EOGNBIFH_60); gnlProkkaEOGNBIFH_61 (original name was: gnl|Prokka|EOGNBIFH_61); gnlProkkaEOGNBIFH_62 (original name was: gnl|Prokka|EOGNBIFH_62); gnlProkkaEOGNBIFH_63 (original name was: gnl|Prokka|EOGNBIFH_63); gnlProkkaEOGNBIFH_64 (original name was: gnl|Prokka|EOGNBIFH_64); gnlProkkaEOGNBIFH_65 (original name was: gnl|Prokka|EOGNBIFH_65); gnlProkkaEOGNBIFH_66 (original name was: gnl|Prokka|EOGNBIFH_66); gnlProkkaEOGNBIFH_67 (original name was: gnl|Prokka|EOGNBIFH_67); gnlProkkaEOGNBIFH_68 (original name was: gnl|Prokka|EOGNBIFH_68); gnlProkkaEOGNBIFH_69 (original name was: gnl|Prokka|EOGNBIFH_69); gnlProkkaEOGNBIFH_70 (original name was: gnl|Prokka|EOGNBIFH_70); gnlProkkaEOGNBIFH_71 (original name was: gnl|Prokka|EOGNBIFH_71); gnlProkkaEOGNBIFH_72 (original name was: gnl|Prokka|EOGNBIFH_72); gnlProkkaEOGNBIFH_73 (original name was: gnl|Prokka|EOGNBIFH_73); gnlProkkaEOGNBIFH_74 (original name was: gnl|Prokka|EOGNBIFH_74); gnlProkkaEOGNBIFH_75 (original name was: gnl|Prokka|EOGNBIFH_75); gnlProkkaEOGNBIFH_76 (original name was: gnl|Prokka|EOGNBIFH_76); gnlProkkaEOGNBIFH_77 (original name was: gnl|Prokka|EOGNBIFH_77); gnlProkkaEOGNBIFH_78 (original name was: gnl|Prokka|EOGNBIFH_78); gnlProkkaEOGNBIFH_79 (original name was: gnl|Prokka|EOGNBIFH_79); gnlProkkaEOGNBIFH_80 (original name was: gnl|Prokka|EOGNBIFH_80); gnlProkkaEOGNBIFH_81 (original name was: gnl|Prokka|EOGNBIFH_81); gnlProkkaEOGNBIFH_82 (original name was: gnl|Prokka|EOGNBIFH_82); gnlProkkaEOGNBIFH_83 (original name was: gnl|Prokka|EOGNBIFH_83); gnlProkkaEOGNBIFH_85 (original name was: gnl|Prokka|EOGNBIFH_85); gnlProkkaEOGNBIFH_86 (original name was: gnl|Prokka|EOGNBIFH_86); gnlProkkaEOGNBIFH_88 (original name was: gnl|Prokka|EOGNBIFH_88); gnlProkkaEOGNBIFH_89 (original name was: gnl|Prokka|EOGNBIFH_89); gnlProkkaEOGNBIFH_91 (original name was: gnl|Prokka|EOGNBIFH_91); gnlProkkaEOGNBIFH_92 (original name was: gnl|Prokka|EOGNBIFH_92); gnlProkkaEOGNBIFH_93 (original name was: gnl|Prokka|EOGNBIFH_93); gnlProkkaEOGNBIFH_94 (original name was: gnl|Prokka|EOGNBIFH_94); gnlProkkaEOGNBIFH_95 (original name was: gnl|Prokka|EOGNBIFH_95); gnlProkkaEOGNBIFH_96 (original name was: gnl|Prokka|EOGNBIFH_96); gnlProkkaEOGNBIFH_97 (original name was: gnl|Prokka|EOGNBIFH_97); gnlProkkaEOGNBIFH_101 (original name was: gnl|Prokka|EOGNBIFH_101); gnlProkkaEOGNBIFH_103 (original name was: gnl|Prokka|EOGNBIFH_103); gnlProkkaEOGNBIFH_115 (original name was: gnl|Prokka|EOGNBIFH_115); gnlProkkaEOGNBIFH_120 (original name was: gnl|Prokka|EOGNBIFH_120); gnlProkkaEOGNBIFH_121 (original name was: gnl|Prokka|EOGNBIFH_121); gnlProkkaEOGNBIFH_125 (original name was: gnl|Prokka|EOGNBIFH_125); gnlProkkaEOGNBIFH_127 (original name was: gnl|Prokka|EOGNBIFH_127); gnlProkkaEOGNBIFH_128 (original name was: gnl|Prokka|EOGNBIFH_128); gnlProkkaEOGNBIFH_129 (original name was: gnl|Prokka|EOGNBIFH_129); gnlProkkaEOGNBIFH_130 (original name was: gnl|Prokka|EOGNBIFH_130); gnlProkkaEOGNBIFH_131 (original name was: gnl|Prokka|EOGNBIFH_131); gnlProkkaEOGNBIFH_133 (original name was: gnl|Prokka|EOGNBIFH_133); gnlProkkaEOGNBIFH_134 (original name was: gnl|Prokka|EOGNBIFH_134); gnlProkkaEOGNBIFH_135 (original name was: gnl|Prokka|EOGNBIFH_135)

Compact view

gnlProkkaEOGNBIFH_8 - Region 1 - RaS-RiPP

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Location: 29,789 - 47,770 nt. (total: 17,982 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEOGNBIFH_17 - Region 1 - NRPS-like

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Location: 1 - 7,434 nt. (total: 7,434 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg13_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaEOGNBIFH_44 - Region 1 - lanthipeptide-class-i

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Location: 1 - 20,801 nt. (total: 20,801 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaEOGNBIFH_84 - Region 1 - RRE-containing

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Location: 126,220 - 147,467 nt. (total: 21,248 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEOGNBIFH_102 - Region 1 - RiPP-like

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Location: 49,890 - 57,090 nt. (total: 7,201 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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No matches found.

gnlProkkaEOGNBIFH_105 - Region 1 - RiPP-like

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Location: 1 - 6,857 nt. (total: 6,857 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaEOGNBIFH_136 - Region 1 - RaS-RiPP

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Location: 1 - 17,037 nt. (total: 17,037 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1