GCA_025132855.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLDFHHHAM_22 (original name was: gnl|Prokka|LDFHHHAM_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	RiPP-like	1	2,400

gnlProkkaLDFHHHAM_39 (original name was: gnl|Prokka|LDFHHHAM_39)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RRE-containing	77	21,324

gnlProkkaLDFHHHAM_57 (original name was: gnl|Prokka|LDFHHHAM_57)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	NRPS-like	1	7,110

gnlProkkaLDFHHHAM_75 (original name was: gnl|Prokka|LDFHHHAM_75)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	RaS-RiPP	29,787	47,762

gnlProkkaLDFHHHAM_92 (original name was: gnl|Prokka|LDFHHHAM_92)

Region	Type	From	To	Most similar known cluster		Similarity
Region 54.1	RaS-RiPP	42,101	59,135	streptide	RiPP	100%

gnlProkkaLDFHHHAM_109 (original name was: gnl|Prokka|LDFHHHAM_109)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	RiPP-like	1	6,849

gnlProkkaLDFHHHAM_121 (original name was: gnl|Prokka|LDFHHHAM_121)

Region	Type	From	To	Most similar known cluster		Similarity
Region 75.1	lanthipeptide-class-i	14,060	38,113	lactocin S	RiPP:Lanthipeptide	10%

Region	Type	From	To	Most similar known cluster	Similarity
Region 10.1	RiPP-like	1	2,400
Region 17.1	RRE-containing	77	21,324
Region 24.1	NRPS-like	1	7,110
Region 37.1	RaS-RiPP	29,787	47,762
Region 54.1	RaS-RiPP	42,101	59,135	streptide	RiPP	100%
Region 70.1	RiPP-like	1	6,849
Region 75.1	lanthipeptide-class-i	14,060	38,113	lactocin S	RiPP:Lanthipeptide	10%

No secondary metabolite regions were found in these records:: gnlProkkaLDFHHHAM_1 (original name was: gnl|Prokka|LDFHHHAM_1); gnlProkkaLDFHHHAM_3 (original name was: gnl|Prokka|LDFHHHAM_3); gnlProkkaLDFHHHAM_8 (original name was: gnl|Prokka|LDFHHHAM_8); gnlProkkaLDFHHHAM_12 (original name was: gnl|Prokka|LDFHHHAM_12); gnlProkkaLDFHHHAM_13 (original name was: gnl|Prokka|LDFHHHAM_13); gnlProkkaLDFHHHAM_14 (original name was: gnl|Prokka|LDFHHHAM_14); gnlProkkaLDFHHHAM_15 (original name was: gnl|Prokka|LDFHHHAM_15); gnlProkkaLDFHHHAM_18 (original name was: gnl|Prokka|LDFHHHAM_18); gnlProkkaLDFHHHAM_19 (original name was: gnl|Prokka|LDFHHHAM_19); gnlProkkaLDFHHHAM_23 (original name was: gnl|Prokka|LDFHHHAM_23); gnlProkkaLDFHHHAM_25 (original name was: gnl|Prokka|LDFHHHAM_25); gnlProkkaLDFHHHAM_28 (original name was: gnl|Prokka|LDFHHHAM_28); gnlProkkaLDFHHHAM_30 (original name was: gnl|Prokka|LDFHHHAM_30); gnlProkkaLDFHHHAM_33 (original name was: gnl|Prokka|LDFHHHAM_33); gnlProkkaLDFHHHAM_38 (original name was: gnl|Prokka|LDFHHHAM_38); gnlProkkaLDFHHHAM_44 (original name was: gnl|Prokka|LDFHHHAM_44); gnlProkkaLDFHHHAM_46 (original name was: gnl|Prokka|LDFHHHAM_46); gnlProkkaLDFHHHAM_48 (original name was: gnl|Prokka|LDFHHHAM_48); gnlProkkaLDFHHHAM_49 (original name was: gnl|Prokka|LDFHHHAM_49); gnlProkkaLDFHHHAM_50 (original name was: gnl|Prokka|LDFHHHAM_50); gnlProkkaLDFHHHAM_56 (original name was: gnl|Prokka|LDFHHHAM_56); gnlProkkaLDFHHHAM_59 (original name was: gnl|Prokka|LDFHHHAM_59); gnlProkkaLDFHHHAM_60 (original name was: gnl|Prokka|LDFHHHAM_60); gnlProkkaLDFHHHAM_61 (original name was: gnl|Prokka|LDFHHHAM_61); gnlProkkaLDFHHHAM_62 (original name was: gnl|Prokka|LDFHHHAM_62); gnlProkkaLDFHHHAM_63 (original name was: gnl|Prokka|LDFHHHAM_63); gnlProkkaLDFHHHAM_64 (original name was: gnl|Prokka|LDFHHHAM_64); gnlProkkaLDFHHHAM_65 (original name was: gnl|Prokka|LDFHHHAM_65); gnlProkkaLDFHHHAM_67 (original name was: gnl|Prokka|LDFHHHAM_67); gnlProkkaLDFHHHAM_70 (original name was: gnl|Prokka|LDFHHHAM_70); gnlProkkaLDFHHHAM_72 (original name was: gnl|Prokka|LDFHHHAM_72); gnlProkkaLDFHHHAM_73 (original name was: gnl|Prokka|LDFHHHAM_73); gnlProkkaLDFHHHAM_74 (original name was: gnl|Prokka|LDFHHHAM_74); gnlProkkaLDFHHHAM_76 (original name was: gnl|Prokka|LDFHHHAM_76); gnlProkkaLDFHHHAM_77 (original name was: gnl|Prokka|LDFHHHAM_77); gnlProkkaLDFHHHAM_78 (original name was: gnl|Prokka|LDFHHHAM_78); gnlProkkaLDFHHHAM_79 (original name was: gnl|Prokka|LDFHHHAM_79); gnlProkkaLDFHHHAM_80 (original name was: gnl|Prokka|LDFHHHAM_80); gnlProkkaLDFHHHAM_81 (original name was: gnl|Prokka|LDFHHHAM_81); gnlProkkaLDFHHHAM_82 (original name was: gnl|Prokka|LDFHHHAM_82); gnlProkkaLDFHHHAM_83 (original name was: gnl|Prokka|LDFHHHAM_83); gnlProkkaLDFHHHAM_84 (original name was: gnl|Prokka|LDFHHHAM_84); gnlProkkaLDFHHHAM_85 (original name was: gnl|Prokka|LDFHHHAM_85); gnlProkkaLDFHHHAM_86 (original name was: gnl|Prokka|LDFHHHAM_86); gnlProkkaLDFHHHAM_87 (original name was: gnl|Prokka|LDFHHHAM_87); gnlProkkaLDFHHHAM_88 (original name was: gnl|Prokka|LDFHHHAM_88); gnlProkkaLDFHHHAM_89 (original name was: gnl|Prokka|LDFHHHAM_89); gnlProkkaLDFHHHAM_90 (original name was: gnl|Prokka|LDFHHHAM_90); gnlProkkaLDFHHHAM_91 (original name was: gnl|Prokka|LDFHHHAM_91); gnlProkkaLDFHHHAM_93 (original name was: gnl|Prokka|LDFHHHAM_93); gnlProkkaLDFHHHAM_94 (original name was: gnl|Prokka|LDFHHHAM_94); gnlProkkaLDFHHHAM_95 (original name was: gnl|Prokka|LDFHHHAM_95); gnlProkkaLDFHHHAM_96 (original name was: gnl|Prokka|LDFHHHAM_96); gnlProkkaLDFHHHAM_97 (original name was: gnl|Prokka|LDFHHHAM_97); gnlProkkaLDFHHHAM_98 (original name was: gnl|Prokka|LDFHHHAM_98); gnlProkkaLDFHHHAM_100 (original name was: gnl|Prokka|LDFHHHAM_100); gnlProkkaLDFHHHAM_101 (original name was: gnl|Prokka|LDFHHHAM_101); gnlProkkaLDFHHHAM_102 (original name was: gnl|Prokka|LDFHHHAM_102); gnlProkkaLDFHHHAM_103 (original name was: gnl|Prokka|LDFHHHAM_103); gnlProkkaLDFHHHAM_104 (original name was: gnl|Prokka|LDFHHHAM_104); gnlProkkaLDFHHHAM_105 (original name was: gnl|Prokka|LDFHHHAM_105); gnlProkkaLDFHHHAM_106 (original name was: gnl|Prokka|LDFHHHAM_106); gnlProkkaLDFHHHAM_107 (original name was: gnl|Prokka|LDFHHHAM_107); gnlProkkaLDFHHHAM_108 (original name was: gnl|Prokka|LDFHHHAM_108); gnlProkkaLDFHHHAM_110 (original name was: gnl|Prokka|LDFHHHAM_110); gnlProkkaLDFHHHAM_112 (original name was: gnl|Prokka|LDFHHHAM_112); gnlProkkaLDFHHHAM_115 (original name was: gnl|Prokka|LDFHHHAM_115); gnlProkkaLDFHHHAM_119 (original name was: gnl|Prokka|LDFHHHAM_119)

Compact view

gnlProkkaLDFHHHAM_22 - Region 1 - RiPP-like

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Location: 1 - 2,400 nt. (total: 2,400 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDFHHHAM_39 - Region 1 - RRE-containing

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Location: 77 - 21,324 nt. (total: 21,248 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

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gnlProkkaLDFHHHAM_57 - Region 1 - NRPS-like

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Location: 1 - 7,110 nt. (total: 7,110 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg24_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaLDFHHHAM_75 - Region 1 - RaS-RiPP

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Location: 29,787 - 47,762 nt. (total: 17,976 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDFHHHAM_92 - Region 1 - RaS-RiPP

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Location: 42,101 - 59,135 nt. (total: 17,035 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

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resistance

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Similar known gene clusters from MIBiG 3.1

gnlProkkaLDFHHHAM_109 - Region 1 - RiPP-like

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Location: 1 - 6,849 nt. (total: 6,849 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDFHHHAM_121 - Region 1 - lanthipeptide-class-i

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Location: 14,060 - 38,113 nt. (total: 24,054 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

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Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.