GCA_025186965.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNCNHKHDH_9 (original name was: gnl|Prokka|NCNHKHDH_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	lanthipeptide-class-i	9,887	33,952	lactocin S	RiPP:Lanthipeptide	10%

gnlProkkaNCNHKHDH_59 (original name was: gnl|Prokka|NCNHKHDH_59)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	RiPP-like	1	9,137

gnlProkkaNCNHKHDH_63 (original name was: gnl|Prokka|NCNHKHDH_63)

Region	Type	From	To	Most similar known cluster		Similarity
Region 45.1	RaS-RiPP,lanthipeptide-class-iv	1	18,181

gnlProkkaNCNHKHDH_67 (original name was: gnl|Prokka|NCNHKHDH_67)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	RRE-containing	11,746	32,993

gnlProkkaNCNHKHDH_72 (original name was: gnl|Prokka|NCNHKHDH_72)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	NRPS-like	1	6,795

gnlProkkaNCNHKHDH_77 (original name was: gnl|Prokka|NCNHKHDH_77)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	RaS-RiPP	1	18,143

No secondary metabolite regions were found in these records:: gnlProkkaNCNHKHDH_1 (original name was: gnl|Prokka|NCNHKHDH_1); gnlProkkaNCNHKHDH_2 (original name was: gnl|Prokka|NCNHKHDH_2); gnlProkkaNCNHKHDH_3 (original name was: gnl|Prokka|NCNHKHDH_3); gnlProkkaNCNHKHDH_4 (original name was: gnl|Prokka|NCNHKHDH_4); gnlProkkaNCNHKHDH_5 (original name was: gnl|Prokka|NCNHKHDH_5); gnlProkkaNCNHKHDH_6 (original name was: gnl|Prokka|NCNHKHDH_6); gnlProkkaNCNHKHDH_7 (original name was: gnl|Prokka|NCNHKHDH_7); gnlProkkaNCNHKHDH_8 (original name was: gnl|Prokka|NCNHKHDH_8); gnlProkkaNCNHKHDH_10 (original name was: gnl|Prokka|NCNHKHDH_10); gnlProkkaNCNHKHDH_11 (original name was: gnl|Prokka|NCNHKHDH_11); gnlProkkaNCNHKHDH_12 (original name was: gnl|Prokka|NCNHKHDH_12); gnlProkkaNCNHKHDH_13 (original name was: gnl|Prokka|NCNHKHDH_13); gnlProkkaNCNHKHDH_14 (original name was: gnl|Prokka|NCNHKHDH_14); gnlProkkaNCNHKHDH_15 (original name was: gnl|Prokka|NCNHKHDH_15); gnlProkkaNCNHKHDH_16 (original name was: gnl|Prokka|NCNHKHDH_16); gnlProkkaNCNHKHDH_17 (original name was: gnl|Prokka|NCNHKHDH_17); gnlProkkaNCNHKHDH_18 (original name was: gnl|Prokka|NCNHKHDH_18); gnlProkkaNCNHKHDH_19 (original name was: gnl|Prokka|NCNHKHDH_19); gnlProkkaNCNHKHDH_20 (original name was: gnl|Prokka|NCNHKHDH_20); gnlProkkaNCNHKHDH_21 (original name was: gnl|Prokka|NCNHKHDH_21); gnlProkkaNCNHKHDH_22 (original name was: gnl|Prokka|NCNHKHDH_22); gnlProkkaNCNHKHDH_23 (original name was: gnl|Prokka|NCNHKHDH_23); gnlProkkaNCNHKHDH_25 (original name was: gnl|Prokka|NCNHKHDH_25); gnlProkkaNCNHKHDH_26 (original name was: gnl|Prokka|NCNHKHDH_26); gnlProkkaNCNHKHDH_28 (original name was: gnl|Prokka|NCNHKHDH_28); gnlProkkaNCNHKHDH_30 (original name was: gnl|Prokka|NCNHKHDH_30); gnlProkkaNCNHKHDH_31 (original name was: gnl|Prokka|NCNHKHDH_31); gnlProkkaNCNHKHDH_32 (original name was: gnl|Prokka|NCNHKHDH_32); gnlProkkaNCNHKHDH_33 (original name was: gnl|Prokka|NCNHKHDH_33); gnlProkkaNCNHKHDH_34 (original name was: gnl|Prokka|NCNHKHDH_34); gnlProkkaNCNHKHDH_35 (original name was: gnl|Prokka|NCNHKHDH_35); gnlProkkaNCNHKHDH_38 (original name was: gnl|Prokka|NCNHKHDH_38); gnlProkkaNCNHKHDH_44 (original name was: gnl|Prokka|NCNHKHDH_44); gnlProkkaNCNHKHDH_53 (original name was: gnl|Prokka|NCNHKHDH_53); gnlProkkaNCNHKHDH_54 (original name was: gnl|Prokka|NCNHKHDH_54); gnlProkkaNCNHKHDH_55 (original name was: gnl|Prokka|NCNHKHDH_55); gnlProkkaNCNHKHDH_56 (original name was: gnl|Prokka|NCNHKHDH_56); gnlProkkaNCNHKHDH_57 (original name was: gnl|Prokka|NCNHKHDH_57); gnlProkkaNCNHKHDH_58 (original name was: gnl|Prokka|NCNHKHDH_58); gnlProkkaNCNHKHDH_60 (original name was: gnl|Prokka|NCNHKHDH_60); gnlProkkaNCNHKHDH_61 (original name was: gnl|Prokka|NCNHKHDH_61); gnlProkkaNCNHKHDH_62 (original name was: gnl|Prokka|NCNHKHDH_62); gnlProkkaNCNHKHDH_64 (original name was: gnl|Prokka|NCNHKHDH_64); gnlProkkaNCNHKHDH_65 (original name was: gnl|Prokka|NCNHKHDH_65); gnlProkkaNCNHKHDH_66 (original name was: gnl|Prokka|NCNHKHDH_66); gnlProkkaNCNHKHDH_68 (original name was: gnl|Prokka|NCNHKHDH_68); gnlProkkaNCNHKHDH_70 (original name was: gnl|Prokka|NCNHKHDH_70); gnlProkkaNCNHKHDH_71 (original name was: gnl|Prokka|NCNHKHDH_71); gnlProkkaNCNHKHDH_73 (original name was: gnl|Prokka|NCNHKHDH_73); gnlProkkaNCNHKHDH_74 (original name was: gnl|Prokka|NCNHKHDH_74); gnlProkkaNCNHKHDH_75 (original name was: gnl|Prokka|NCNHKHDH_75); gnlProkkaNCNHKHDH_76 (original name was: gnl|Prokka|NCNHKHDH_76); gnlProkkaNCNHKHDH_79 (original name was: gnl|Prokka|NCNHKHDH_79); gnlProkkaNCNHKHDH_80 (original name was: gnl|Prokka|NCNHKHDH_80)

Compact view

gnlProkkaNCNHKHDH_9 - Region 1 - lanthipeptide-class-i

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Location: 9,887 - 33,952 nt. (total: 24,066 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaNCNHKHDH_59 - Region 1 - RiPP-like

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Location: 1 - 9,137 nt. (total: 9,137 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCNHKHDH_63 - Region 1 - RaS-RiPP,lanthipeptide-class-iv

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Location: 1 - 18,181 nt. (total: 18,181 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)
lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaNCNHKHDH_67 - Region 1 - RRE-containing

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Location: 11,746 - 32,993 nt. (total: 21,248 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNCNHKHDH_72 - Region 1 - NRPS-like

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Location: 1 - 6,795 nt. (total: 6,795 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg53_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaNCNHKHDH_77 - Region 1 - RaS-RiPP

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Location: 1 - 18,143 nt. (total: 18,143 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.