Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_025187345.1	Streptococcus thermophilus	CIRM-BIA 30	SAMN10365642	1963	France	-	0	0	22	32	38.83
2	GCA_903886285.1	Streptococcus thermophilus	-	SAMEA6957291	1963	France	-	0	0	22	28	35.61
3	GCA_041514265.1	Streptococcus thermophilus	S24735	SAMN18478710	2019	Switzerland	-	306	0	23	27	35.47
4	GCA_041514255.1	Streptococcus thermophilus	S24736	SAMN18478711	2019	Switzerland	-	419	0	24	28	36.88
5	GCA_042187235.1	Streptococcus thermophilus	S24758	SAMN18490528	2019	Switzerland	-	419	0	24	32	40.00
6	GCA_025187385.1	Streptococcus thermophilus	CIRM-BIA 19	SAMN10365641	1963	France	-	666	0	25	33	41.40
7	GCA_903886075.1	Streptococcus thermophilus	-	SAMEA6957287	1963	France	-	666	0	25	29	38.29
8	GCA_042187255.1	Streptococcus thermophilus	S24741	SAMN18490525	2019	Switzerland	-	683	0	25	33	41.40
9	GCA_017366965.1	Streptococcus thermophilus	S72	SAMN15923554	2019	Switzerland	-	686	0	25	33	41.40
10	GCA_017366985.1	Streptococcus thermophilus	24855	SAMN15923552	2019	Switzerland	-	686	0	25	29	38.29
11	GCA_017367225.1	Streptococcus thermophilus	13494	SAMN15923537	1984	Switzerland	-	686	0	25	29	38.29
12	GCA_021229135.1	Streptococcus thermophilus	8253 (205)	SAMN23827835	2001	Bulgaria: Balkan Mountains	-	692	0	24	33	40.80
13	GCA_041513585.1	Streptococcus thermophilus	S24742	SAMN18478712	2019	Switzerland	-	696	0	25	29	38.29
14	GCA_017359825.1	Streptococcus thermophilus	24853	SAMN15923550	2019	Switzerland	-	697	0	25	29	38.29
15	GCA_017584245.1	Streptococcus thermophilus	MAG_rmk202_sterm	SAMN13284972	2019-02-11	Switzerland:Liebefeld	-	698	0	25	28	37.54
16	GCA_039783105.1	Streptococcus thermophilus	90729	SAMN16933234	1995	Ireland	-	698	0	22	30	37.20
17	GCA_017360245.1	Streptococcus thermophilus	13498	SAMN15923541	1984	Switzerland	-	699	0	25	28	37.54
18	GCA_017367005.1	Streptococcus thermophilus	24737	SAMN15923546	2019	Switzerland	-	699	0	25	28	37.54
19	GCA_017367045.1	Streptococcus thermophilus	13500	SAMN15923545	1984	Switzerland	-	699	0	25	32	40.61
20	GCA_017367285.1	Streptococcus thermophilus	13492	SAMN15923535	1984	Switzerland	-	699	0	25	32	40.61
21	GCA_017367305.1	Streptococcus thermophilus	13493	SAMN15923536	1984	Switzerland	-	699	0	25	32	40.61
22	GCA_017367345.1	Streptococcus thermophilus	13491	SAMN15923534	1984	Switzerland	-	699	0	25	32	40.61
23	GCA_022509625.1	Streptococcus thermophilus	QAUSTN63	SAMN22187333	2018	-	-	699	0	25	32	40.61
24	GCA_017367065.1	Streptococcus thermophilus	24854	SAMN15923551	2019	Switzerland	-	700	0	25	28	37.54
25	GCA_019449675.1	Streptococcus thermophilus	Vach57	SAMN19116181	2020-11-09	Ireland	-	700	0	23	33	40.22
26	GCA_027947275.1	Streptococcus thermophilus	TSGB 4240	SAMN32339319	2020-07	Turkey	-	700	0	17	34	38.01
27	GCA_025122495.1	Streptococcus thermophilus	CIRM-BIA 1131	SAMN10365212	1987	Greece	-	701	0	24	33	40.80
28	GCA_040883385.1	Streptococcus thermophilus	AM-ST-89	SAMN42007031	-	-	-	702	0	25	34	42.20
29	GCA_039782795.1	Streptococcus thermophilus	90728	SAMN16933233	1995	Ireland	-	703	0	23	30	37.80
30	GCA_019449765.1	Streptococcus thermophilus	Vach60	SAMN19116190	2020-11-09	Ireland	-	705	0	22	33	39.66
31	GCA_025187485.1	Streptococcus thermophilus	CIRM-BIA 2104	SAMN10365635	1993	France	-	705	0	18	33	37.59
32	GCA_025127295.1	Streptococcus thermophilus	976	SAMN10365140	1981	Switzerland	-	707	0	25	33	41.40
33	GCA_025186885.1	Streptococcus thermophilus	CIRM-BIA 2102	SAMN10365656	1950	Finland	-	707	0	24	32	40.00
34	GCA_025187415.1	Streptococcus thermophilus	CIRM-BIA 24	SAMN10365638	1959	France	-	707	0	18	31	35.85
35	GCA_025188845.1	Streptococcus thermophilus	CIRM-BIA 246	SAMN10365557	2008	France	-	707	0	22	33	39.66
36	GCA_002443035.1	Streptococcus thermophilus	B59671	SAMN07369158	-	USA:ERRC at Wyndmoor, PA	-	708	0	26	29	38.95
37	GCA_041514355.1	Streptococcus thermophilus	S24724	SAMN18478703	2019	Switzerland	-	708	0	25	29	38.29
38	GCA_042187345.1	Streptococcus thermophilus	S24725	SAMN18490521	2019	Switzerland	-	708	0	25	33	41.40
39	GCA_041514275.1	Streptococcus thermophilus	S24734	SAMN18478709	2019	Switzerland	-	709	0	25	29	38.29
40	GCA_003402855.1	Streptococcus thermophilus	ST109	SAMN09715176	-	USA:ERRC at Wyndmoor, PA	-	710	0	25	29	38.29
41	GCA_025186665.1	Streptococcus thermophilus	CIRM-BIA 1119	SAMN10365661	1978	Bulgaria	-	710	0	23	34	41.05
42	GCA_041512935.1	Streptococcus thermophilus	S24743	SAMN18478713	2019	Switzerland	-	710	0	27	29	39.62
43	GCA_013307265.1	Streptococcus thermophilus	CS9	SAMN09536719	2014	China	-	711	0	26	30	39.70
44	GCA_025187565.1	Streptococcus thermophilus	CIRM-BIA 1057	SAMN10365631	1991	France	-	711	0	26	33	42.01
45	GCA_039784895.1	Streptococcus thermophilus	ST55	SAMN16933245	1995	Ireland	-	711	0	26	30	39.70
46	GCA_025187305.1	Streptococcus thermophilus	CIRM-BIA 32	SAMN10365643	1964	France	-	712	0	18	33	37.59
47	GCA_025187365.1	Streptococcus thermophilus	CIRM-BIA 18	SAMN10365640	1964	France	-	712	0	18	33	37.59
48	GCA_039783225.1	Streptococcus thermophilus	CNRZ760	SAMN16933237	1995	Ireland	-	712	0	22	30	37.20
49	GCA_041511495.1	Streptococcus thermophilus	S24746	SAMN18478715	2019	Switzerland	-	712	0	25	28	37.54
50	GCA_903885985.1	Streptococcus thermophilus	-	SAMEA6957286	1964	France	-	712	0	18	29	34.13
51	GCA_903886345.1	Streptococcus thermophilus	-	SAMEA6957292	1964	France	-	712	0	18	29	34.13
52	GCA_020076015.1	Streptococcus thermophilus	CF13_14	SAMN15078605	2018-03-12	USA:MD	Homo sapiens	713	0	22	34	40.50
53	GCA_039783625.1	Streptococcus thermophilus	CNRZ302	SAMN16933247	1995	Ireland	-	713	0	18	29	34.13
54	GCA_045159855.1	Streptococcus thermophilus	MM8	SAMN16933250	2017	Ireland	-	713	0	26	28	38.21
55	GCA_025132955.1	Streptococcus thermophilus	1047	SAMN10365132	2007	Kenya	-	715	0	26	33	42.01
56	GCA_025186565.1	Streptococcus thermophilus	CIRM-BIA 1049	SAMN10365665	1979	France	-	715	0	22	34	40.50
57	GCA_025186725.1	Streptococcus thermophilus	CIRM-BIA 1124	SAMN10365660	1978	France	-	715	0	26	33	42.01
58	GCA_025186805.1	Streptococcus thermophilus	CIRM-BIA 1047	SAMN10365659	1978	France	-	715	0	26	33	42.01
59	GCA_903890825.1	Streptococcus thermophilus	-	SAMEA6957274	1978	France	-	715	0	26	29	38.95
60	GCA_903890925.1	Streptococcus thermophilus	-	SAMEA6957276	1978	France	-	715	0	22	30	37.20
61	GCA_006539425.1	Streptococcus thermophilus	-	SAMD00097243	-	-	-	716	0	26	32	41.23
62	GCA_025186625.1	Streptococcus thermophilus	CIRM-BIA 1048	SAMN10365662	1978	Bulgaria	-	716	0	22	33	39.66
63	GCA_029983065.1	Streptococcus thermophilus	FUA329	SAMN31530271	2020-05-27	China:Lianyungang	Homo sapiens	716	0	26	32	41.23
64	GCA_903890905.1	Streptococcus thermophilus	-	SAMEA6957275	1978	Bulgaria	-	716	0	22	29	36.40
65	GCA_038049945.1	Streptococcus thermophilus	TCI125	SAMN40642328	2013-11	Taiwan:Taipei	-	718	0	26	29	38.95
66	GCA_025187145.1	Streptococcus thermophilus	CIRM-BIA 772	SAMN10365650	1973	France	-	719	0	22	32	38.83
67	GCA_903886635.1	Streptococcus thermophilus	-	SAMEA6957298	1963	France	-	719	0	22	28	35.61
68	GCA_020075875.1	Streptococcus thermophilus	CF1_14	SAMN06464116	2016-10-15	USA:MD	Homo sapiens	720	0	21	33	39.12
69	GCA_039783475.1	Streptococcus thermophilus	AVA1121	SAMN16933246	1995	Ireland	-	720	0	25	26	36.07
70	GCA_039784855.1	Streptococcus thermophilus	CNRZ1202	SAMN16933239	1995	Ireland	-	720	0	25	29	38.29
71	GCA_025186785.1	Streptococcus thermophilus	CIRM-BIA 1050	SAMN10365657	1973	Greece	-	721	0	25	33	41.40
72	GCA_903890945.1	Streptococcus thermophilus	-	SAMEA6957277	1973	Greece	-	721	0	25	29	38.29
73	GCA_025739385.1	Streptococcus thermophilus	4067	SAMN16933230	1996	Ireland	-	722	0	22	28	35.61
74	GCA_039784805.1	Streptococcus thermophilus	AVA116	SAMN16933236	1996	Ireland	-	722	0	28	29	40.31
75	GCA_025186965.1	Streptococcus thermophilus	CIRM-BIA 23	SAMN10365655	1958	France	-	723	0	26	33	42.01
76	GCA_900094135.1	Streptococcus thermophilus	ACA-DC 2	SAMEA4355128	-	-	-	723	0	28	29	40.31
77	GCA_903886195.1	Streptococcus thermophilus	-	SAMEA6957289	1955	France	-	723	0	26	29	38.95
78	GCA_027947375.1	Streptococcus thermophilus	TSGB 4231	SAMN32339314	2020-07	Turkey	-	725	0	23	33	40.22
79	GCA_027947245.1	Streptococcus thermophilus	TSGB 4251	SAMN32339323	2020-07	Turkey	-	726	0	23	33	40.22
80	GCA_028463905.1	Streptococcus thermophilus	strain TSGB 4141	SAMN32902037	2020-07	Turkey	-	726	0	23	29	37.01
81	GCA_013370965.1	Streptococcus thermophilus	CBC-S77	SAMN15249454	1977-05-02	Bulgaria: West Rhode Mountain	-	727	0	30	33	44.60
82	GCA_025187705.1	Streptococcus thermophilus	CIRM-BIA 1125	SAMN10365625	1987	Greece	-	727	0	23	32	39.41
83	GCA_903891205.1	Streptococcus thermophilus	-	SAMEA6957283	1987	Greece	-	727	0	23	28	36.24
84	GCA_025187195.1	Streptococcus thermophilus	CIRM-BIA 1117	SAMN10365648	1973	France	-	728	0	21	32	38.28
85	GCA_000011825.1	Streptococcus thermophilus LMG 18311	LMG 18311	SAMN02604079	-	-	-	729	0	37	29	47.01
86	GCA_025187005.1	Streptococcus thermophilus	CIRM-BIA 1358	SAMN10365653	1974	France	-	729	0	28	32	42.52
87	GCA_039781665.1	Streptococcus thermophilus	4052	SAMN16933229	1995	Ireland	-	729	0	26	29	38.95
88	GCA_903891245.1	Streptococcus thermophilus	-	SAMEA6957284	1974	France	-	729	0	28	28	39.60
89	GCA_025187545.1	Streptococcus thermophilus	CIRM-BIA 16	SAMN10365632	1954	France	-	730	0	37	33	49.58
90	GCA_903884415.1	Streptococcus thermophilus	-	SAMEA6957285	1954	France	-	730	0	37	29	47.01
91	GCA_027947295.1	Streptococcus thermophilus	TSGB 4236	SAMN32339317	2020-07	Turkey	-	731	0	21	32	38.28
92	GCA_025186525.1	Streptococcus thermophilus	CIRM-BIA 1121	SAMN10365663	1978	France	-	732	0	27	32	41.87
93	GCA_903891135.1	Streptococcus thermophilus	-	SAMEA6957281	1978	France	-	732	0	27	28	38.90
94	GCA_025187265.1	Streptococcus thermophilus	CIRM-BIA 65	SAMN10365646	1971	France	-	733	0	21	32	38.28
95	GCA_025739325.1	Streptococcus thermophilus	CNRZ1151	SAMN16933238	1995	Ireland	-	733	0	37	29	47.01
96	GCA_027947325.1	Streptococcus thermophilus	TSGB 4232	SAMN32339315	2020-07	Turkey	-	733	0	25	32	40.61
97	GCA_903886475.1	Streptococcus thermophilus	-	SAMEA6957296	1971	France	-	733	0	21	28	35.00
98	GCA_025187185.1	Streptococcus thermophilus	CIRM-BIA 1116	SAMN10365649	1973	France	-	734	0	34	33	47.38
99	GCA_025187235.1	Streptococcus thermophilus	CIRM-BIA 67	SAMN10365647	1971	France	-	734	0	21	32	38.28
100	GCA_025187645.1	Streptococcus thermophilus	CIRM-BIA 1056	SAMN10365627	1990	Indonesia	-	734	0	21	32	38.28