GCA_025187605.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLANLPBCD_22 (original name was: gnl|Prokka|LANLPBCD_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	RaS-RiPP	17,784	39,335

gnlProkkaLANLPBCD_33 (original name was: gnl|Prokka|LANLPBCD_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RaS-RiPP	1	12,031	streptide	RiPP	75%

gnlProkkaLANLPBCD_35 (original name was: gnl|Prokka|LANLPBCD_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	RiPP-like	42,422	60,188	ubericin K	Other	12%

gnlProkkaLANLPBCD_59 (original name was: gnl|Prokka|LANLPBCD_59)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	NRPS-like	1	6,793

gnlProkkaLANLPBCD_119 (original name was: gnl|Prokka|LANLPBCD_119)

Region	Type	From	To	Most similar known cluster		Similarity
Region 76.1	RaS-RiPP	33,127	51,291

Region	Type	From	To	Most similar known cluster	Similarity
Region 10.1	RaS-RiPP	17,784	39,335
Region 21.1	RaS-RiPP	1	12,031	streptide	RiPP	75%
Region 23.1	RiPP-like	42,422	60,188	ubericin K	Other	12%
Region 44.1	NRPS-like	1	6,793
Region 76.1	RaS-RiPP	33,127	51,291

No secondary metabolite regions were found in these records:: gnlProkkaLANLPBCD_2 (original name was: gnl|Prokka|LANLPBCD_2); gnlProkkaLANLPBCD_3 (original name was: gnl|Prokka|LANLPBCD_3); gnlProkkaLANLPBCD_5 (original name was: gnl|Prokka|LANLPBCD_5); gnlProkkaLANLPBCD_6 (original name was: gnl|Prokka|LANLPBCD_6); gnlProkkaLANLPBCD_9 (original name was: gnl|Prokka|LANLPBCD_9); gnlProkkaLANLPBCD_10 (original name was: gnl|Prokka|LANLPBCD_10); gnlProkkaLANLPBCD_11 (original name was: gnl|Prokka|LANLPBCD_11); gnlProkkaLANLPBCD_12 (original name was: gnl|Prokka|LANLPBCD_12); gnlProkkaLANLPBCD_13 (original name was: gnl|Prokka|LANLPBCD_13); gnlProkkaLANLPBCD_23 (original name was: gnl|Prokka|LANLPBCD_23); gnlProkkaLANLPBCD_24 (original name was: gnl|Prokka|LANLPBCD_24); gnlProkkaLANLPBCD_25 (original name was: gnl|Prokka|LANLPBCD_25); gnlProkkaLANLPBCD_26 (original name was: gnl|Prokka|LANLPBCD_26); gnlProkkaLANLPBCD_27 (original name was: gnl|Prokka|LANLPBCD_27); gnlProkkaLANLPBCD_28 (original name was: gnl|Prokka|LANLPBCD_28); gnlProkkaLANLPBCD_29 (original name was: gnl|Prokka|LANLPBCD_29); gnlProkkaLANLPBCD_30 (original name was: gnl|Prokka|LANLPBCD_30); gnlProkkaLANLPBCD_31 (original name was: gnl|Prokka|LANLPBCD_31); gnlProkkaLANLPBCD_32 (original name was: gnl|Prokka|LANLPBCD_32); gnlProkkaLANLPBCD_34 (original name was: gnl|Prokka|LANLPBCD_34); gnlProkkaLANLPBCD_36 (original name was: gnl|Prokka|LANLPBCD_36); gnlProkkaLANLPBCD_37 (original name was: gnl|Prokka|LANLPBCD_37); gnlProkkaLANLPBCD_38 (original name was: gnl|Prokka|LANLPBCD_38); gnlProkkaLANLPBCD_39 (original name was: gnl|Prokka|LANLPBCD_39); gnlProkkaLANLPBCD_40 (original name was: gnl|Prokka|LANLPBCD_40); gnlProkkaLANLPBCD_41 (original name was: gnl|Prokka|LANLPBCD_41); gnlProkkaLANLPBCD_42 (original name was: gnl|Prokka|LANLPBCD_42); gnlProkkaLANLPBCD_43 (original name was: gnl|Prokka|LANLPBCD_43); gnlProkkaLANLPBCD_44 (original name was: gnl|Prokka|LANLPBCD_44); gnlProkkaLANLPBCD_45 (original name was: gnl|Prokka|LANLPBCD_45); gnlProkkaLANLPBCD_46 (original name was: gnl|Prokka|LANLPBCD_46); gnlProkkaLANLPBCD_49 (original name was: gnl|Prokka|LANLPBCD_49); gnlProkkaLANLPBCD_50 (original name was: gnl|Prokka|LANLPBCD_50); gnlProkkaLANLPBCD_51 (original name was: gnl|Prokka|LANLPBCD_51); gnlProkkaLANLPBCD_52 (original name was: gnl|Prokka|LANLPBCD_52); gnlProkkaLANLPBCD_53 (original name was: gnl|Prokka|LANLPBCD_53); gnlProkkaLANLPBCD_54 (original name was: gnl|Prokka|LANLPBCD_54); gnlProkkaLANLPBCD_55 (original name was: gnl|Prokka|LANLPBCD_55); gnlProkkaLANLPBCD_56 (original name was: gnl|Prokka|LANLPBCD_56); gnlProkkaLANLPBCD_58 (original name was: gnl|Prokka|LANLPBCD_58); gnlProkkaLANLPBCD_60 (original name was: gnl|Prokka|LANLPBCD_60); gnlProkkaLANLPBCD_61 (original name was: gnl|Prokka|LANLPBCD_61); gnlProkkaLANLPBCD_62 (original name was: gnl|Prokka|LANLPBCD_62); gnlProkkaLANLPBCD_63 (original name was: gnl|Prokka|LANLPBCD_63); gnlProkkaLANLPBCD_64 (original name was: gnl|Prokka|LANLPBCD_64); gnlProkkaLANLPBCD_65 (original name was: gnl|Prokka|LANLPBCD_65); gnlProkkaLANLPBCD_66 (original name was: gnl|Prokka|LANLPBCD_66); gnlProkkaLANLPBCD_67 (original name was: gnl|Prokka|LANLPBCD_67); gnlProkkaLANLPBCD_68 (original name was: gnl|Prokka|LANLPBCD_68); gnlProkkaLANLPBCD_70 (original name was: gnl|Prokka|LANLPBCD_70); gnlProkkaLANLPBCD_71 (original name was: gnl|Prokka|LANLPBCD_71); gnlProkkaLANLPBCD_72 (original name was: gnl|Prokka|LANLPBCD_72); gnlProkkaLANLPBCD_73 (original name was: gnl|Prokka|LANLPBCD_73); gnlProkkaLANLPBCD_75 (original name was: gnl|Prokka|LANLPBCD_75); gnlProkkaLANLPBCD_81 (original name was: gnl|Prokka|LANLPBCD_81); gnlProkkaLANLPBCD_86 (original name was: gnl|Prokka|LANLPBCD_86); gnlProkkaLANLPBCD_87 (original name was: gnl|Prokka|LANLPBCD_87); gnlProkkaLANLPBCD_90 (original name was: gnl|Prokka|LANLPBCD_90); gnlProkkaLANLPBCD_97 (original name was: gnl|Prokka|LANLPBCD_97); gnlProkkaLANLPBCD_98 (original name was: gnl|Prokka|LANLPBCD_98); gnlProkkaLANLPBCD_105 (original name was: gnl|Prokka|LANLPBCD_105); gnlProkkaLANLPBCD_108 (original name was: gnl|Prokka|LANLPBCD_108); gnlProkkaLANLPBCD_109 (original name was: gnl|Prokka|LANLPBCD_109); gnlProkkaLANLPBCD_110 (original name was: gnl|Prokka|LANLPBCD_110); gnlProkkaLANLPBCD_111 (original name was: gnl|Prokka|LANLPBCD_111); gnlProkkaLANLPBCD_112 (original name was: gnl|Prokka|LANLPBCD_112); gnlProkkaLANLPBCD_113 (original name was: gnl|Prokka|LANLPBCD_113); gnlProkkaLANLPBCD_114 (original name was: gnl|Prokka|LANLPBCD_114); gnlProkkaLANLPBCD_115 (original name was: gnl|Prokka|LANLPBCD_115); gnlProkkaLANLPBCD_116 (original name was: gnl|Prokka|LANLPBCD_116); gnlProkkaLANLPBCD_117 (original name was: gnl|Prokka|LANLPBCD_117)

Compact view

gnlProkkaLANLPBCD_22 - Region 1 - RaS-RiPP

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Location: 17,784 - 39,335 nt. (total: 21,552 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLANLPBCD_33 - Region 1 - RaS-RiPP

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Location: 1 - 12,031 nt. (total: 12,031 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaLANLPBCD_35 - Region 1 - RiPP-like

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Location: 42,422 - 60,188 nt. (total: 17,767 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

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resistance

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Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaLANLPBCD_59 - Region 1 - NRPS-like

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Location: 1 - 6,793 nt. (total: 6,793 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

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Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg44_3

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaLANLPBCD_119 - Region 1 - RaS-RiPP

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Location: 33,127 - 51,291 nt. (total: 18,165 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.