GCA_025187615.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDKGCIGHF_50 (original name was: gnl|Prokka|DKGCIGHF_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RaS-RiPP	11,882	33,433

gnlProkkaDKGCIGHF_54 (original name was: gnl|Prokka|DKGCIGHF_54)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RaS-RiPP	1	12,027	streptide	RiPP	75%

gnlProkkaDKGCIGHF_57 (original name was: gnl|Prokka|DKGCIGHF_57)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RaS-RiPP	33,127	51,289

gnlProkkaDKGCIGHF_70 (original name was: gnl|Prokka|DKGCIGHF_70)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RiPP-like	42,422	60,188	ubericin K	Other	12%

gnlProkkaDKGCIGHF_109 (original name was: gnl|Prokka|DKGCIGHF_109)

Region	Type	From	To	Most similar known cluster		Similarity
Region 66.1	NRPS-like	1	6,791

Region	Type	From	To	Most similar known cluster	Similarity
Region 16.1	RaS-RiPP	11,882	33,433
Region 19.1	RaS-RiPP	1	12,027	streptide	RiPP	75%
Region 22.1	RaS-RiPP	33,127	51,289
Region 35.1	RiPP-like	42,422	60,188	ubericin K	Other	12%
Region 66.1	NRPS-like	1	6,791

Compact view

gnlProkkaDKGCIGHF_50 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 11,882 - 33,433 nt. (total: 21,552 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDKGCIGHF_54 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 1 - 12,027 nt. (total: 12,027 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDKGCIGHF_57 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 33,127 - 51,289 nt. (total: 18,163 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDKGCIGHF_70 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 42,422 - 60,188 nt. (total: 17,767 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDKGCIGHF_109 - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 1 - 6,791 nt. (total: 6,791 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg66_2

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)