GCA_025187705.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaOFBKCMCC_5 (original name was: gnl|Prokka|OFBKCMCC_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	lanthipeptide-class-i	7,286	31,336

gnlProkkaOFBKCMCC_7 (original name was: gnl|Prokka|OFBKCMCC_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	1	1,896

gnlProkkaOFBKCMCC_24 (original name was: gnl|Prokka|OFBKCMCC_24)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RRE-containing	11,751	32,998

gnlProkkaOFBKCMCC_26 (original name was: gnl|Prokka|OFBKCMCC_26)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	1	6,793

gnlProkkaOFBKCMCC_30 (original name was: gnl|Prokka|OFBKCMCC_30)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	RaS-RiPP	1	5,269

gnlProkkaOFBKCMCC_64 (original name was: gnl|Prokka|OFBKCMCC_64)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	RaS-RiPP,lanthipeptide-class-iv	71,079	97,865

gnlProkkaOFBKCMCC_72 (original name was: gnl|Prokka|OFBKCMCC_72)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	RaS-RiPP	1	18,158

Region	Type	From	To	Similarity
Region 2.1	lanthipeptide-class-i	7,286	31,336
Region 4.1	RiPP-like	1	1,896
Region 20.1	RRE-containing	11,751	32,998
Region 22.1	RiPP-like	1	6,793
Region 26.1	RaS-RiPP	1	5,269
Region 40.1	RaS-RiPP,lanthipeptide-class-iv	71,079	97,865
Region 42.1	RaS-RiPP	1	18,158

No secondary metabolite regions were found in these records:: gnlProkkaOFBKCMCC_4 (original name was: gnl|Prokka|OFBKCMCC_4); gnlProkkaOFBKCMCC_6 (original name was: gnl|Prokka|OFBKCMCC_6); gnlProkkaOFBKCMCC_8 (original name was: gnl|Prokka|OFBKCMCC_8); gnlProkkaOFBKCMCC_9 (original name was: gnl|Prokka|OFBKCMCC_9); gnlProkkaOFBKCMCC_10 (original name was: gnl|Prokka|OFBKCMCC_10); gnlProkkaOFBKCMCC_11 (original name was: gnl|Prokka|OFBKCMCC_11); gnlProkkaOFBKCMCC_12 (original name was: gnl|Prokka|OFBKCMCC_12); gnlProkkaOFBKCMCC_13 (original name was: gnl|Prokka|OFBKCMCC_13); gnlProkkaOFBKCMCC_14 (original name was: gnl|Prokka|OFBKCMCC_14); gnlProkkaOFBKCMCC_15 (original name was: gnl|Prokka|OFBKCMCC_15); gnlProkkaOFBKCMCC_16 (original name was: gnl|Prokka|OFBKCMCC_16); gnlProkkaOFBKCMCC_17 (original name was: gnl|Prokka|OFBKCMCC_17); gnlProkkaOFBKCMCC_19 (original name was: gnl|Prokka|OFBKCMCC_19); gnlProkkaOFBKCMCC_20 (original name was: gnl|Prokka|OFBKCMCC_20); gnlProkkaOFBKCMCC_21 (original name was: gnl|Prokka|OFBKCMCC_21); gnlProkkaOFBKCMCC_22 (original name was: gnl|Prokka|OFBKCMCC_22); gnlProkkaOFBKCMCC_23 (original name was: gnl|Prokka|OFBKCMCC_23); gnlProkkaOFBKCMCC_25 (original name was: gnl|Prokka|OFBKCMCC_25); gnlProkkaOFBKCMCC_27 (original name was: gnl|Prokka|OFBKCMCC_27); gnlProkkaOFBKCMCC_28 (original name was: gnl|Prokka|OFBKCMCC_28); gnlProkkaOFBKCMCC_29 (original name was: gnl|Prokka|OFBKCMCC_29); gnlProkkaOFBKCMCC_32 (original name was: gnl|Prokka|OFBKCMCC_32); gnlProkkaOFBKCMCC_33 (original name was: gnl|Prokka|OFBKCMCC_33); gnlProkkaOFBKCMCC_34 (original name was: gnl|Prokka|OFBKCMCC_34); gnlProkkaOFBKCMCC_35 (original name was: gnl|Prokka|OFBKCMCC_35); gnlProkkaOFBKCMCC_36 (original name was: gnl|Prokka|OFBKCMCC_36); gnlProkkaOFBKCMCC_37 (original name was: gnl|Prokka|OFBKCMCC_37); gnlProkkaOFBKCMCC_40 (original name was: gnl|Prokka|OFBKCMCC_40); gnlProkkaOFBKCMCC_41 (original name was: gnl|Prokka|OFBKCMCC_41); gnlProkkaOFBKCMCC_46 (original name was: gnl|Prokka|OFBKCMCC_46); gnlProkkaOFBKCMCC_51 (original name was: gnl|Prokka|OFBKCMCC_51); gnlProkkaOFBKCMCC_56 (original name was: gnl|Prokka|OFBKCMCC_56); gnlProkkaOFBKCMCC_61 (original name was: gnl|Prokka|OFBKCMCC_61); gnlProkkaOFBKCMCC_62 (original name was: gnl|Prokka|OFBKCMCC_62); gnlProkkaOFBKCMCC_71 (original name was: gnl|Prokka|OFBKCMCC_71); gnlProkkaOFBKCMCC_73 (original name was: gnl|Prokka|OFBKCMCC_73); gnlProkkaOFBKCMCC_74 (original name was: gnl|Prokka|OFBKCMCC_74); gnlProkkaOFBKCMCC_75 (original name was: gnl|Prokka|OFBKCMCC_75); gnlProkkaOFBKCMCC_76 (original name was: gnl|Prokka|OFBKCMCC_76); gnlProkkaOFBKCMCC_77 (original name was: gnl|Prokka|OFBKCMCC_77); gnlProkkaOFBKCMCC_78 (original name was: gnl|Prokka|OFBKCMCC_78); gnlProkkaOFBKCMCC_79 (original name was: gnl|Prokka|OFBKCMCC_79); gnlProkkaOFBKCMCC_80 (original name was: gnl|Prokka|OFBKCMCC_80); gnlProkkaOFBKCMCC_84 (original name was: gnl|Prokka|OFBKCMCC_84); gnlProkkaOFBKCMCC_93 (original name was: gnl|Prokka|OFBKCMCC_93); gnlProkkaOFBKCMCC_95 (original name was: gnl|Prokka|OFBKCMCC_95)

Compact view

gnlProkkaOFBKCMCC_5 - Region 1 - lanthipeptide-class-i

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Location: 7,286 - 31,336 nt. (total: 24,051 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaOFBKCMCC_7 - Region 1 - RiPP-like

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Location: 1 - 1,896 nt. (total: 1,896 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFBKCMCC_24 - Region 1 - RRE-containing

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Location: 11,751 - 32,998 nt. (total: 21,248 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFBKCMCC_26 - Region 1 - RiPP-like

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Location: 1 - 6,793 nt. (total: 6,793 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFBKCMCC_30 - Region 1 - RaS-RiPP

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Location: 1 - 5,269 nt. (total: 5,269 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFBKCMCC_64 - Region 1 - RaS-RiPP,lanthipeptide-class-iv

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Location: 71,079 - 97,865 nt. (total: 26,787 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)
lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaOFBKCMCC_72 - Region 1 - RaS-RiPP

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Location: 1 - 18,158 nt. (total: 18,158 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.