GCA_025190905.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNBIMPABH_10 (original name was: gnl|Prokka|NBIMPABH_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	LAP	243,731	266,606

gnlProkkaNBIMPABH_22 (original name was: gnl|Prokka|NBIMPABH_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	RiPP-like	75,000	89,582	gassericin T	RiPP	55%

gnlProkkaNBIMPABH_23 (original name was: gnl|Prokka|NBIMPABH_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	lanthipeptide-class-iv	5,709	28,246

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	LAP	243,731	266,606
Region 9.1	RiPP-like	75,000	89,582	gassericin T	RiPP	55%
Region 10.1	lanthipeptide-class-iv	5,709	28,246

Compact view

gnlProkkaNBIMPABH_10 - Region 1 - LAP

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Location: 243,731 - 266,606 nt. (total: 22,876 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNBIMPABH_22 - Region 1 - RiPP-like

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Location: 75,000 - 89,582 nt. (total: 14,583 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNBIMPABH_23 - Region 1 - lanthipeptide-class-iv

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Location: 5,709 - 28,246 nt. (total: 22,538 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.