Select genomic region:
Overview
9.1
10.1
13.1
15.1
24.1
28.1

### Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_9)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 9.1 | porA | SCFA | 132,422 | 156,049 | Ethanolamine degradation S. typhimurium | EUT | 15%

c00010_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_10)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | acetate2butyrate | SCFA | 1 | 20,407 | Acetate to butyrate C. sporogenes | BUT | 83%

c00013_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Others_HGD_unassigned | Putative | 83,732 | 108,060 |

c00015_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_15)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 15.1 | Rnf_complex,succinate2propionate | SCFA | 50,168 | 90,351 | Rnf complex C. sporogenes | RNF | 100%

c00024_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_24)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 24.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 40,608 | 71,650 | Putrescine2spermidine E. rectale | SPRM | 100%

c00028_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_28)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 28.1 | Pyruvate2acetate-formate | SCFA | 2,520 | 25,654 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 9.1 | porA | SCFA | 132,422 | 156,049 | Ethanolamine degradation S. typhimurium | EUT | 15%
Region 10.1 | acetate2butyrate | SCFA | 1 | 20,407 | Acetate to butyrate C. sporogenes | BUT | 83%
Region 13.1 | Others_HGD_unassigned | Putative | 83,732 | 108,060 |
Region 15.1 | Rnf_complex,succinate2propionate | SCFA | 50,168 | 90,351 | Rnf complex C. sporogenes | RNF | 100%
Region 24.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 40,608 | 71,650 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 28.1 | Pyruvate2acetate-formate | SCFA | 2,520 | 25,654 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_8)
  c00011_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_14)
  c00016_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_23)
  c00025_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_27)
  c00029_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_30)

Compact view
c00009_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 132,422 - 156,049 nt. (total: 23,628 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00010_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 20,407 nt. (total: 20,407 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00013_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 83,732 - 108,060 nt. (total: 24,329 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00015_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 50,168 - 90,351 nt. (total: 40,184 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00024_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 40,608 - 71,650 nt. (total: 31,043 nt) Show pHMM detection rules used
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00028_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 2,520 - 25,654 nt. (total: 23,135 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.