GCA_025541935.1 - 6 region(s)

Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	porA	SCFA	132,422	156,049	Ethanolamine degradation S. typhimurium	EUT	15%

c00010_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	acetate2butyrate	SCFA	1	20,407	Acetate to butyrate C. sporogenes	BUT	83%

c00013_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Others_HGD_unassigned	Putative	83,732	108,060

c00015_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Rnf_complex,succinate2propionate	SCFA	50,168	90,351	Rnf complex C. sporogenes	RNF	100%

c00024_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	40,608	71,650	Putrescine2spermidine E. rectale	SPRM	100%

c00028_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Pyruvate2acetate-formate	SCFA	2,520	25,654	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_1); c00002_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_2); c00003_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_3); c00004_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_4); c00005_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_5); c00006_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_6); c00007_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_7); c00008_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_8); c00011_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_11); c00012_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_12); c00014_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_14); c00016_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_16); c00017_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_17); c00018_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_18); c00019_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_19); c00020_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_20); c00021_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_21); c00022_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_22); c00023_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_23); c00025_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_25); c00026_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_26); c00027_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_27); c00029_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_29); c00030_gnlPro.. (original name was: gnl|Prokka|BIEGEGDG_30)

Compact view

c00009_gnlPro.. - Region 1 - porA

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Location: 132,422 - 156,049 nt. (total: 23,628 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00010_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 20,407 nt. (total: 20,407 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00013_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 83,732 - 108,060 nt. (total: 24,329 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00015_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 50,168 - 90,351 nt. (total: 40,184 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00024_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 40,608 - 71,650 nt. (total: 31,043 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00028_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 2,520 - 25,654 nt. (total: 23,135 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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