GCA_026965975.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLNGHCDPB_14 (original name was: gnl|Prokka|LNGHCDPB_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS-like	25,504	67,933

gnlProkkaLNGHCDPB_25 (original name was: gnl|Prokka|LNGHCDPB_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RRE-containing	1	16,019	polysaccharide C	Saccharide	8%

Region	Type	From	To	Most similar known cluster	Similarity
Region 14.1	NRPS-like	25,504	67,933
Region 25.1	RRE-containing	1	16,019	polysaccharide C	Saccharide	8%

No secondary metabolite regions were found in these records:: gnlProkkaLNGHCDPB_1 (original name was: gnl|Prokka|LNGHCDPB_1); gnlProkkaLNGHCDPB_2 (original name was: gnl|Prokka|LNGHCDPB_2); gnlProkkaLNGHCDPB_3 (original name was: gnl|Prokka|LNGHCDPB_3); gnlProkkaLNGHCDPB_4 (original name was: gnl|Prokka|LNGHCDPB_4); gnlProkkaLNGHCDPB_5 (original name was: gnl|Prokka|LNGHCDPB_5); gnlProkkaLNGHCDPB_6 (original name was: gnl|Prokka|LNGHCDPB_6); gnlProkkaLNGHCDPB_7 (original name was: gnl|Prokka|LNGHCDPB_7); gnlProkkaLNGHCDPB_8 (original name was: gnl|Prokka|LNGHCDPB_8); gnlProkkaLNGHCDPB_9 (original name was: gnl|Prokka|LNGHCDPB_9); gnlProkkaLNGHCDPB_10 (original name was: gnl|Prokka|LNGHCDPB_10); gnlProkkaLNGHCDPB_11 (original name was: gnl|Prokka|LNGHCDPB_11); gnlProkkaLNGHCDPB_12 (original name was: gnl|Prokka|LNGHCDPB_12); gnlProkkaLNGHCDPB_13 (original name was: gnl|Prokka|LNGHCDPB_13); gnlProkkaLNGHCDPB_15 (original name was: gnl|Prokka|LNGHCDPB_15); gnlProkkaLNGHCDPB_16 (original name was: gnl|Prokka|LNGHCDPB_16); gnlProkkaLNGHCDPB_17 (original name was: gnl|Prokka|LNGHCDPB_17); gnlProkkaLNGHCDPB_18 (original name was: gnl|Prokka|LNGHCDPB_18); gnlProkkaLNGHCDPB_19 (original name was: gnl|Prokka|LNGHCDPB_19); gnlProkkaLNGHCDPB_20 (original name was: gnl|Prokka|LNGHCDPB_20); gnlProkkaLNGHCDPB_21 (original name was: gnl|Prokka|LNGHCDPB_21); gnlProkkaLNGHCDPB_22 (original name was: gnl|Prokka|LNGHCDPB_22); gnlProkkaLNGHCDPB_23 (original name was: gnl|Prokka|LNGHCDPB_23); gnlProkkaLNGHCDPB_24 (original name was: gnl|Prokka|LNGHCDPB_24); gnlProkkaLNGHCDPB_26 (original name was: gnl|Prokka|LNGHCDPB_26); gnlProkkaLNGHCDPB_27 (original name was: gnl|Prokka|LNGHCDPB_27); gnlProkkaLNGHCDPB_28 (original name was: gnl|Prokka|LNGHCDPB_28); gnlProkkaLNGHCDPB_29 (original name was: gnl|Prokka|LNGHCDPB_29); gnlProkkaLNGHCDPB_30 (original name was: gnl|Prokka|LNGHCDPB_30); gnlProkkaLNGHCDPB_31 (original name was: gnl|Prokka|LNGHCDPB_31); gnlProkkaLNGHCDPB_32 (original name was: gnl|Prokka|LNGHCDPB_32); gnlProkkaLNGHCDPB_33 (original name was: gnl|Prokka|LNGHCDPB_33); gnlProkkaLNGHCDPB_34 (original name was: gnl|Prokka|LNGHCDPB_34); gnlProkkaLNGHCDPB_35 (original name was: gnl|Prokka|LNGHCDPB_35); gnlProkkaLNGHCDPB_36 (original name was: gnl|Prokka|LNGHCDPB_36); gnlProkkaLNGHCDPB_37 (original name was: gnl|Prokka|LNGHCDPB_37); gnlProkkaLNGHCDPB_38 (original name was: gnl|Prokka|LNGHCDPB_38); gnlProkkaLNGHCDPB_39 (original name was: gnl|Prokka|LNGHCDPB_39); gnlProkkaLNGHCDPB_40 (original name was: gnl|Prokka|LNGHCDPB_40); gnlProkkaLNGHCDPB_41 (original name was: gnl|Prokka|LNGHCDPB_41); gnlProkkaLNGHCDPB_42 (original name was: gnl|Prokka|LNGHCDPB_42); gnlProkkaLNGHCDPB_43 (original name was: gnl|Prokka|LNGHCDPB_43); gnlProkkaLNGHCDPB_44 (original name was: gnl|Prokka|LNGHCDPB_44); gnlProkkaLNGHCDPB_45 (original name was: gnl|Prokka|LNGHCDPB_45); gnlProkkaLNGHCDPB_46 (original name was: gnl|Prokka|LNGHCDPB_46); gnlProkkaLNGHCDPB_47 (original name was: gnl|Prokka|LNGHCDPB_47); gnlProkkaLNGHCDPB_48 (original name was: gnl|Prokka|LNGHCDPB_48); gnlProkkaLNGHCDPB_49 (original name was: gnl|Prokka|LNGHCDPB_49); gnlProkkaLNGHCDPB_50 (original name was: gnl|Prokka|LNGHCDPB_50); gnlProkkaLNGHCDPB_51 (original name was: gnl|Prokka|LNGHCDPB_51); gnlProkkaLNGHCDPB_52 (original name was: gnl|Prokka|LNGHCDPB_52); gnlProkkaLNGHCDPB_53 (original name was: gnl|Prokka|LNGHCDPB_53); gnlProkkaLNGHCDPB_54 (original name was: gnl|Prokka|LNGHCDPB_54); gnlProkkaLNGHCDPB_55 (original name was: gnl|Prokka|LNGHCDPB_55); gnlProkkaLNGHCDPB_56 (original name was: gnl|Prokka|LNGHCDPB_56); gnlProkkaLNGHCDPB_57 (original name was: gnl|Prokka|LNGHCDPB_57); gnlProkkaLNGHCDPB_58 (original name was: gnl|Prokka|LNGHCDPB_58); gnlProkkaLNGHCDPB_59 (original name was: gnl|Prokka|LNGHCDPB_59)

Compact view

gnlProkkaLNGHCDPB_14 - Region 1 - NRPS-like

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Location: 25,504 - 67,933 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 25503 - 67933:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg14_40

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaLNGHCDPB_25 - Region 1 - RRE-containing

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Location: 1 - 16,019 nt. (total: 16,019 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1