GCA_026967315.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLODKPLBC_18 (original name was: gnl|Prokka|LODKPLBC_18)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	lanthipeptide-class-iv	1	12,045

gnlProkkaLODKPLBC_36 (original name was: gnl|Prokka|LODKPLBC_36)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	T3PKS	35,640	76,812

gnlProkkaLODKPLBC_46 (original name was: gnl|Prokka|LODKPLBC_46)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	RiPP-like	91,036	108,848

Region	Type	From	To	Similarity
Region 11.1	lanthipeptide-class-iv	1	12,045
Region 22.1	T3PKS	35,640	76,812
Region 26.1	RiPP-like	91,036	108,848

No secondary metabolite regions were found in these records:: gnlProkkaLODKPLBC_1 (original name was: gnl|Prokka|LODKPLBC_1); gnlProkkaLODKPLBC_2 (original name was: gnl|Prokka|LODKPLBC_2); gnlProkkaLODKPLBC_4 (original name was: gnl|Prokka|LODKPLBC_4); gnlProkkaLODKPLBC_6 (original name was: gnl|Prokka|LODKPLBC_6); gnlProkkaLODKPLBC_7 (original name was: gnl|Prokka|LODKPLBC_7); gnlProkkaLODKPLBC_8 (original name was: gnl|Prokka|LODKPLBC_8); gnlProkkaLODKPLBC_10 (original name was: gnl|Prokka|LODKPLBC_10); gnlProkkaLODKPLBC_11 (original name was: gnl|Prokka|LODKPLBC_11); gnlProkkaLODKPLBC_13 (original name was: gnl|Prokka|LODKPLBC_13); gnlProkkaLODKPLBC_17 (original name was: gnl|Prokka|LODKPLBC_17); gnlProkkaLODKPLBC_20 (original name was: gnl|Prokka|LODKPLBC_20); gnlProkkaLODKPLBC_22 (original name was: gnl|Prokka|LODKPLBC_22); gnlProkkaLODKPLBC_23 (original name was: gnl|Prokka|LODKPLBC_23); gnlProkkaLODKPLBC_24 (original name was: gnl|Prokka|LODKPLBC_24); gnlProkkaLODKPLBC_25 (original name was: gnl|Prokka|LODKPLBC_25); gnlProkkaLODKPLBC_27 (original name was: gnl|Prokka|LODKPLBC_27); gnlProkkaLODKPLBC_30 (original name was: gnl|Prokka|LODKPLBC_30); gnlProkkaLODKPLBC_33 (original name was: gnl|Prokka|LODKPLBC_33); gnlProkkaLODKPLBC_34 (original name was: gnl|Prokka|LODKPLBC_34); gnlProkkaLODKPLBC_35 (original name was: gnl|Prokka|LODKPLBC_35); gnlProkkaLODKPLBC_39 (original name was: gnl|Prokka|LODKPLBC_39); gnlProkkaLODKPLBC_41 (original name was: gnl|Prokka|LODKPLBC_41); gnlProkkaLODKPLBC_42 (original name was: gnl|Prokka|LODKPLBC_42); gnlProkkaLODKPLBC_65 (original name was: gnl|Prokka|LODKPLBC_65); gnlProkkaLODKPLBC_66 (original name was: gnl|Prokka|LODKPLBC_66); gnlProkkaLODKPLBC_68 (original name was: gnl|Prokka|LODKPLBC_68); gnlProkkaLODKPLBC_70 (original name was: gnl|Prokka|LODKPLBC_70); gnlProkkaLODKPLBC_72 (original name was: gnl|Prokka|LODKPLBC_72); gnlProkkaLODKPLBC_74 (original name was: gnl|Prokka|LODKPLBC_74)

Compact view

gnlProkkaLODKPLBC_18 - Region 1 - lanthipeptide-class-iv

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Location: 1 - 12,045 nt. (total: 12,045 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaLODKPLBC_36 - Region 1 - T3PKS

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Location: 35,640 - 76,812 nt. (total: 41,173 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLODKPLBC_46 - Region 1 - RiPP-like

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Location: 91,036 - 108,848 nt. (total: 17,813 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.