GCA_027947325.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDOCEAPPB_4 (original name was: gnl|Prokka|DOCEAPPB_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	lanthipeptide-class-i	16,037	40,096	lactocin S	RiPP:Lanthipeptide	10%

gnlProkkaDOCEAPPB_8 (original name was: gnl|Prokka|DOCEAPPB_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RRE-containing	11,829	32,121

No secondary metabolite regions were found in these records:: gnlProkkaDOCEAPPB_1 (original name was: gnl|Prokka|DOCEAPPB_1); gnlProkkaDOCEAPPB_2 (original name was: gnl|Prokka|DOCEAPPB_2); gnlProkkaDOCEAPPB_3 (original name was: gnl|Prokka|DOCEAPPB_3); gnlProkkaDOCEAPPB_5 (original name was: gnl|Prokka|DOCEAPPB_5); gnlProkkaDOCEAPPB_6 (original name was: gnl|Prokka|DOCEAPPB_6); gnlProkkaDOCEAPPB_7 (original name was: gnl|Prokka|DOCEAPPB_7); gnlProkkaDOCEAPPB_9 (original name was: gnl|Prokka|DOCEAPPB_9); gnlProkkaDOCEAPPB_10 (original name was: gnl|Prokka|DOCEAPPB_10); gnlProkkaDOCEAPPB_11 (original name was: gnl|Prokka|DOCEAPPB_11); gnlProkkaDOCEAPPB_12 (original name was: gnl|Prokka|DOCEAPPB_12); gnlProkkaDOCEAPPB_13 (original name was: gnl|Prokka|DOCEAPPB_13); gnlProkkaDOCEAPPB_14 (original name was: gnl|Prokka|DOCEAPPB_14); gnlProkkaDOCEAPPB_15 (original name was: gnl|Prokka|DOCEAPPB_15); gnlProkkaDOCEAPPB_16 (original name was: gnl|Prokka|DOCEAPPB_16); gnlProkkaDOCEAPPB_17 (original name was: gnl|Prokka|DOCEAPPB_17); gnlProkkaDOCEAPPB_18 (original name was: gnl|Prokka|DOCEAPPB_18); gnlProkkaDOCEAPPB_19 (original name was: gnl|Prokka|DOCEAPPB_19); gnlProkkaDOCEAPPB_20 (original name was: gnl|Prokka|DOCEAPPB_20); gnlProkkaDOCEAPPB_21 (original name was: gnl|Prokka|DOCEAPPB_21); gnlProkkaDOCEAPPB_22 (original name was: gnl|Prokka|DOCEAPPB_22); gnlProkkaDOCEAPPB_23 (original name was: gnl|Prokka|DOCEAPPB_23); gnlProkkaDOCEAPPB_24 (original name was: gnl|Prokka|DOCEAPPB_24); gnlProkkaDOCEAPPB_25 (original name was: gnl|Prokka|DOCEAPPB_25); gnlProkkaDOCEAPPB_26 (original name was: gnl|Prokka|DOCEAPPB_26); gnlProkkaDOCEAPPB_27 (original name was: gnl|Prokka|DOCEAPPB_27); gnlProkkaDOCEAPPB_28 (original name was: gnl|Prokka|DOCEAPPB_28); gnlProkkaDOCEAPPB_29 (original name was: gnl|Prokka|DOCEAPPB_29); gnlProkkaDOCEAPPB_30 (original name was: gnl|Prokka|DOCEAPPB_30); gnlProkkaDOCEAPPB_31 (original name was: gnl|Prokka|DOCEAPPB_31); gnlProkkaDOCEAPPB_32 (original name was: gnl|Prokka|DOCEAPPB_32); gnlProkkaDOCEAPPB_33 (original name was: gnl|Prokka|DOCEAPPB_33); gnlProkkaDOCEAPPB_34 (original name was: gnl|Prokka|DOCEAPPB_34); gnlProkkaDOCEAPPB_35 (original name was: gnl|Prokka|DOCEAPPB_35); gnlProkkaDOCEAPPB_36 (original name was: gnl|Prokka|DOCEAPPB_36); gnlProkkaDOCEAPPB_37 (original name was: gnl|Prokka|DOCEAPPB_37); gnlProkkaDOCEAPPB_38 (original name was: gnl|Prokka|DOCEAPPB_38); gnlProkkaDOCEAPPB_39 (original name was: gnl|Prokka|DOCEAPPB_39); gnlProkkaDOCEAPPB_40 (original name was: gnl|Prokka|DOCEAPPB_40); gnlProkkaDOCEAPPB_41 (original name was: gnl|Prokka|DOCEAPPB_41); gnlProkkaDOCEAPPB_42 (original name was: gnl|Prokka|DOCEAPPB_42); gnlProkkaDOCEAPPB_43 (original name was: gnl|Prokka|DOCEAPPB_43); gnlProkkaDOCEAPPB_44 (original name was: gnl|Prokka|DOCEAPPB_44); gnlProkkaDOCEAPPB_45 (original name was: gnl|Prokka|DOCEAPPB_45); gnlProkkaDOCEAPPB_46 (original name was: gnl|Prokka|DOCEAPPB_46); gnlProkkaDOCEAPPB_53 (original name was: gnl|Prokka|DOCEAPPB_53); gnlProkkaDOCEAPPB_54 (original name was: gnl|Prokka|DOCEAPPB_54); gnlProkkaDOCEAPPB_55 (original name was: gnl|Prokka|DOCEAPPB_55); gnlProkkaDOCEAPPB_56 (original name was: gnl|Prokka|DOCEAPPB_56)

Compact view

gnlProkkaDOCEAPPB_4 - Region 1 - lanthipeptide-class-i

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Location: 16,037 - 40,096 nt. (total: 24,060 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaDOCEAPPB_8 - Region 1 - RRE-containing

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Location: 11,829 - 32,121 nt. (total: 20,293 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.