Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_028201775.1	Bifidobacterium breve	J1101312st1_E4_J1101312_190322	SAMN31321433	2019-03-22	USA	Homo sapiens	0	1	0	0	1.00
2	GCA_028203415.1	Bifidobacterium breve	J1101312st1_H6_J1101312_190322	SAMN31321434	2019-03-22	USA	Homo sapiens	10	1	0	0	1.00
3	GCA_002838545.1	Bifidobacterium breve	082W48	SAMN06828932	2014-10-01	Ireland	Homo sapiens	957	1	0	0	1.00
4	GCA_002838265.1	Bifidobacterium breve	NRBB02	SAMN06827019	2014-10-01	Netherlands	Homo sapiens	967	1	0	0	1.00
5	GCA_002838645.1	Bifidobacterium breve	NRBB20	SAMN07160580	2014-10-01	Netherlands	Homo sapiens	967	1	0	0	1.00
6	GCA_002838665.1	Bifidobacterium breve	NRBB27	SAMN07160976	2014-10-01	Netherlands	Homo sapiens	967	1	0	0	1.00
7	GCA_002838605.1	Bifidobacterium breve	NRBB18	SAMN07160576	2014-10-01	Netherlands	Homo sapiens	968	1	0	0	1.00
8	GCA_002838685.1	Bifidobacterium breve	NRBB49	SAMN07160977	2014-10-01	Netherlands	Homo sapiens	968	1	0	0	1.00
9	GCA_002838625.1	Bifidobacterium breve	NRBB19	SAMN07160980	2014-10-01	Netherlands	Homo sapiens	969	1	0	0	1.00
10	GCA_002838745.1	Bifidobacterium breve	NRBB08	SAMN07160574	2014-10-01	Netherlands	Homo sapiens	969	1	0	0	1.00
11	GCA_002838465.1	Bifidobacterium breve	017W439	SAMN06828931	2014-10-01	Ireland	Homo sapiens	979	1	0	0	1.00
12	GCA_003370155.1	Bifidobacterium breve	12-4	SAMN07189840	2005	Canada	Homo sapiens	982	1	0	0	1.00
13	GCA_009931415.1	Bifidobacterium breve	JR01	SAMN09977286	2000-02-01	Sweden	Homo sapiens	983	1	0	0	1.00
14	GCA_024665435.1	Bifidobacterium breve	BIF195	SAMN29862206	-	-	Homo sapiens	1006	1	0	0	1.00
15	GCA_000569035.1	Bifidobacterium breve NCFB 2258	NCFB 2258	SAMN03081481	-	-	-	1007	1	0	0	1.00
16	GCA_028203585.1	Bifidobacterium breve	2217st1_B10_2217SCRN_200827	SAMN31321423	2020-08-27	USA	Homo sapiens	1008	1	0	0	1.00
17	GCA_002838285.1	Bifidobacterium breve	NRBB04	SAMN06827050	2014-10-01	Netherlands	Homo sapiens	1009	1	0	0	1.00
18	GCA_039912975.1	Bifidobacterium breve	2217st1_C9_2217SCRN_200827	SAMN31321424	2020-08-27	USA	Homo sapiens	1009	1	0	0	1.00
19	GCA_002271275.1	Bifidobacterium breve	7E	SAMN05933031	2016-09-06	Italy	Homo sapiens	1010	3	0	0	3.00
20	GCA_027215475.1	Bifidobacterium breve	SDS-1921-OWr1	SAMN32244247	2020-01-16	Canada: Vancouver	Homo sapiens	1011	3	0	0	3.00
21	GCA_030216845.1	Bifidobacterium breve	UMB6370	SAMN34996547	-	USA: Maywood, IL	Homo sapiens	1011	3	0	0	3.00
22	GCA_027214765.1	Bifidobacterium breve	SDS-512-W	SAMN32244243	2019-12-12	Canada: Vancouver	Homo sapiens	1012	3	0	0	3.00
23	GCA_027214925.1	Bifidobacterium breve	SDS-1919-OWr1	SAMN32244250	2019-10-18	Canada: Vancouver	Homo sapiens	1012	3	0	0	3.00
24	GCA_029723405.1	Bifidobacterium breve	LH_1052	SAMN24838611	2017	United Kingdom	Homo sapiens	1012	3	0	0	3.00
25	GCA_009498435.1	Bifidobacterium breve	JSRL01	SAMN13135167	2019-02-20	South Korea:Sunchang	-	1013	3	0	0	3.00
26	GCA_027215465.1	Bifidobacterium breve	SDS-1920-OWr1	SAMN32244266	2019-10-29	Canada: Vancouver	Homo sapiens	1014	3	0	0	3.00
27	GCA_028201795.1	Bifidobacterium breve	J1100826st1_H11_J1100826_190719	SAMN31321431	2019-07-19	USA	Homo sapiens	1016	1	0	0	1.00
28	GCA_028203305.1	Bifidobacterium breve	J1100826st1_F9_J1100826_190719	SAMN31321430	2019-07-19	USA	Homo sapiens	1016	1	0	0	1.00
29	GCA_028201755.1	Bifidobacterium breve	J1100826st1_H2_J1100826_190719	SAMN31321432	2019-07-19	USA	Homo sapiens	1017	1	0	0	1.00
30	GCA_028203435.1	Bifidobacterium breve	J1100826st1_F12_J1100826_190719	SAMN31321429	2019-07-19	USA	Homo sapiens	1018	1	0	0	1.00
31	GCA_000569075.1	Bifidobacterium breve S27	S27	SAMN03081483	-	-	-	1019	1	0	0	1.00
32	GCA_001264035.1	Bifidobacterium breve MCC 0305	MCC 0305	SAMN03978801	-	Japan	Homo sapiens	1021	2	0	0	2.00
33	GCA_002838525.1	Bifidobacterium breve	180W83	SAMN06829003	2014-10-01	Ireland	Homo sapiens	1021	1	0	0	1.00
34	GCA_000569055.1	Bifidobacterium breve 689b	689b	SAMN03081482	-	-	-	1023	1	0	0	1.00
35	GCA_901980275.1	Bifidobacterium breve	INIA P734	SAMEA5675151	2008	Spain	Homo sapiens	1024	1	0	0	1.00
36	GCA_000568875.1	Bifidobacterium breve 31L	31L	SAMN02951889	-	Italy: Parma	Homo sapiens	1026	3	0	0	3.00
37	GCA_000568975.1	Bifidobacterium breve JCM 7017	JCM 7017	SAMN03081479	-	-	-	1031	1	0	0	1.00
38	GCA_001264135.1	Bifidobacterium breve MCC 1454	MCC 1454	SAMN03978804	-	Japan	Homo sapiens	1031	1	0	0	1.00
39	GCA_002075865.1	Bifidobacterium breve	1900B	SAMN06621718	-	Italy	Homo sapiens	1037	2	0	0	2.00
40	GCA_030230575.1	Bifidobacterium breve	UMB1343A	SAMN35153882	-	USA: Maywood, IL	Homo sapiens	1037	1	0	0	1.00
41	GCA_003370175.1	Bifidobacterium breve	322-1	SAMN07189839	2012	Canada: Toronto	Homo sapiens	1043	2	0	0	2.00
42	GCA_902505445.1	Bifidobacterium breve	-	SAMEA4838173	2014-08-08	United Kingdom	-	1045	1	0	0	1.00
43	GCA_902505485.1	Bifidobacterium breve	-	SAMEA4838172	2014-08-08	United Kingdom	-	1045	1	0	0	1.00
44	GCA_001264155.1	Bifidobacterium breve MCC 1604	MCC 1604	SAMN03978800	-	Japan	Homo sapiens	1046	2	0	0	2.00
45	GCA_002838505.1	Bifidobacterium breve	DRBB28	SAMN06827976	2014-10-01	Netherlands	Homo sapiens	1046	3	0	0	3.00
46	GCA_001264095.1	Bifidobacterium breve MCC 1094	MCC 1094	SAMN03978802	-	Japan	Homo sapiens	1049	2	0	0	2.00
47	GCA_002838385.1	Bifidobacterium breve	NRBB52	SAMN06827097	2014-10-01	Netherlands	Homo sapiens	1051	1	0	0	1.00
48	GCA_029723715.1	Bifidobacterium breve	LH_989	SAMN24838599	2017	United Kingdom	Homo sapiens	1051	1	0	0	1.00
49	GCA_000213865.1	Bifidobacterium breve ACS-071-V-Sch8b	ACS-071-V-Sch8b	SAMN00100758	-	-	Homo sapiens	1052	2	0	0	2.00
50	GCA_028201785.1	Bifidobacterium breve	BSD2780061687st1_F3_BSD3448080968_160620	SAMN31321427	2016-06-20	USA	Homo sapiens	1053	2	0	0	2.00
51	GCA_028201855.1	Bifidobacterium breve	BSD2780061687st1_C6_BSD3448080968_160620	SAMN31321426	2016-06-20	USA	Homo sapiens	1053	2	0	0	2.00
52	GCA_001263915.1	Bifidobacterium breve MCC 1128	MCC 1128	SAMN03978799	-	Japan	Homo sapiens	1054	1	0	0	1.00
53	GCA_002838485.1	Bifidobacterium breve	215W447a	SAMN06829004	2014-10-01	Ireland	Homo sapiens	1054	1	0	0	1.00
54	GCA_006546585.1	Bifidobacterium breve	SC95	SAMN12108292	2012-05-22	USA	Homo sapiens	1054	2	0	0	2.00
55	GCA_049191365.1	Bifidobacterium breve	IATA136	SAMN45053982	2022	Spain:Valencia	Homo sapiens	1054	3	0	0	3.00
56	GCA_002838345.1	Bifidobacterium breve	NRBB57	SAMN06827912	2014-10-01	Netherlands	Homo sapiens	1057	2	0	0	2.00
57	GCA_002838585.1	Bifidobacterium breve	CNCM I-4321	SAMN06827913	2014-10-01	Netherlands	Homo sapiens	1057	4	0	0	4.00
58	GCA_002838725.1	Bifidobacterium breve	DRBB30	SAMN07160979	2014-10-01	Netherlands	Homo sapiens	1057	4	0	0	4.00
59	GCA_028201875.1	Bifidobacterium breve	BSD2780061687st1_C6_BSD2780061687_150420	SAMN31321425	2015-04-20	USA	Homo sapiens	1057	2	0	0	2.00
60	GCA_028203385.1	Bifidobacterium breve	BSD2780061687st1_H11_BSD2780061687_150420	SAMN31321428	2015-04-20	USA	Homo sapiens	1057	2	0	0	2.00
61	GCA_049191355.1	Bifidobacterium breve	IATA131	SAMN45053980	2022	Spain:Valencia	Homo sapiens	1058	3	0	0	3.00
62	GCA_030216945.1	Bifidobacterium breve	UMB5641	SAMN34996542	2015-01	USA: Maywood, IL	Homo sapiens	1059	2	1	0	2.24
63	GCA_002076075.1	Bifidobacterium breve	1889B	SAMN06621709	-	Italy	Homo sapiens	1062	1	0	0	1.00
64	GCA_049191505.1	Bifidobacterium breve	IATA027	SAMN45053948	2022	Spain:Valencia	Homo sapiens	1063	3	0	0	3.00
65	GCA_039912955.1	Bifidobacterium breve	1001285st1_E7_1001285H_161024	SAMN31321421	2016-10-24	USA	Homo sapiens	1064	2	0	0	2.00
66	GCA_900102865.1	Bifidobacterium breve	RP2	SAMN05216468	-	-	-	1064	3	0	0	3.00
67	GCA_049204755.1	Bifidobacterium breve	IATA153	SAMN45053990	2022	Spain:Valencia	Homo sapiens	1065	5	0	0	5.00
68	GCA_001263845.1	Bifidobacterium breve MCC 0476	MCC 0476	SAMN03978797	-	Japan	Homo sapiens	1067	2	0	0	2.00
69	GCA_001546235.1	Bifidobacterium breve	GED8481	SAMN03842221	-	-	Homo sapiens	1070	2	0	0	2.00
70	GCA_027212705.1	Bifidobacterium breve	SDS-736-OW	SAMN32244232	2019-10-02	Canada: Vancouver	Homo sapiens	1071	1	0	0	1.00
71	GCA_027214545.1	Bifidobacterium breve	SDS-734-OW	SAMN32244261	2019-09-26	Canada: Vancouver	Homo sapiens	1071	1	0	0	1.00
72	GCA_027214935.1	Bifidobacterium breve	SDS-1059-dR	SAMN32244248	2019-04-16	Canada: Vancouver	Homo sapiens	1071	2	0	0	2.00
73	GCA_027215655.1	Bifidobacterium breve	SDS-1060-OWr	SAMN32244239	2019-07-11	Canada: Vancouver	Homo sapiens	1071	2	0	0	2.00
74	GCA_002838565.1	Bifidobacterium breve	139W423	SAMN06829002	2014-10-01	Ireland	Homo sapiens	1072	2	0	0	2.00
75	GCA_027212575.1	Bifidobacterium breve	SDS-512-OW	SAMN32244242	2019-12-12	Canada: Vancouver	Homo sapiens	1072	2	0	0	2.00
76	GCA_027212715.1	Bifidobacterium breve	SDS-967-OWr	SAMN32244254	2019-02-21	Canada: Vancouver	Homo sapiens	1072	1	0	0	1.00
77	GCA_027212825.1	Bifidobacterium breve	SDS-968-OWr	SAMN32244256	2019-06-24	Canada: Vancouver	Homo sapiens	1072	1	0	0	1.00
78	GCA_027214635.1	Bifidobacterium breve	SDS-511-OW	SAMN32244260	2019-09-26	Canada: Vancouver	Homo sapiens	1072	2	0	0	2.00
79	GCA_027214905.1	Bifidobacterium breve	SDS-1057-dR	SAMN32244233	2019-04-04	Canada: Vancouver	Homo sapiens	1072	2	0	0	2.00
80	GCA_027215105.1	Bifidobacterium breve	SDS-965-OWr	SAMN32244241	2019-03-12	Canada: Vancouver	Homo sapiens	1072	1	0	0	1.00
81	GCA_029723755.1	Bifidobacterium breve	LH_1004	SAMN24838601	2017	United Kingdom	Homo sapiens	1072	6	0	0	6.00
82	GCA_000466545.1	Bifidobacterium breve JCP7499	JCP7499	SAMN02436887	-	-	Homo sapiens	1073	3	0	0	3.00
83	GCA_027214985.1	Bifidobacterium breve	SDS-509-OW	SAMN32244249	2019-07-19	Canada: Vancouver	Homo sapiens	1073	2	0	0	2.00
84	GCA_029340075.1	Bifidobacterium breve	RC158_19046_CD	SAMN32756521	2015-05	United Kingdom: Addenbrooke's hospital	Homo sapiens	1074	1	0	0	1.00
85	GCA_029723395.1	Bifidobacterium breve	LH_1047	SAMN24838609	2017	United Kingdom	Homo sapiens	1075	6	0	0	6.00
86	GCA_000247755.2	Bifidobacterium breve CECT 7263	CECT 7263	SAMN02471362	2007-09	Spain	Homo sapiens	1076	4	0	0	4.00
87	GCA_000411435.1	Bifidobacterium breve HPH0326	HPH0326	SAMN02596976	-	-	-	1076	1	0	0	1.00
88	GCA_002027265.1	Bifidobacterium breve	CECT7263	SAMN06473336	-	Spain	Homo sapiens	1077	4	0	0	4.00
89	GCA_001025175.1	Bifidobacterium breve DSM 20213 = JCM 1192	-	SAMD00061041	-	-	-	1078	1	0	0	1.00
90	GCA_003370125.1	Bifidobacterium breve	W20-13	SAMN07189841	2005	Canada: Winnipeg	Homo sapiens	1078	1	0	0	1.00
91	GCA_003370265.1	Bifidobacterium breve	W56	SAMN07189842	2005	Canada: Winnipeg	Homo sapiens	1078	1	0	0	1.00
92	GCA_003813065.1	Bifidobacterium breve	FDAARGOS_561	SAMN10163185	1963	-	Homo sapiens	1078	1	0	0	1.00
93	GCA_003095095.1	Bifidobacterium breve	DS15_17	SAMN06464121	2016-09-14	USA:MD	Homo sapiens	1079	1	0	0	1.00
94	GCA_008868405.1	Bifidobacterium breve	BIO6018	SAMN12856546	-	-	Homo sapiens	1079	1	0	0	1.00
95	GCA_047301025.1	Bifidobacterium breve	JKL2022	SAMN30403323	2008-02-22	South Korea: Anseong City	-	1079	2	0	0	2.00
96	GCA_900637145.1	Bifidobacterium breve	NCTC11815	SAMEA4076721	1900/1985	-	Human (Infant)	1079	1	0	0	1.00
97	GCA_000158015.1	Bifidobacterium breve DSM 20213 = JCM 1192	DSM 20213	SAMN00008778	-	-	Homo sapiens	1080	2	0	0	2.00
98	GCA_002838245.1	Bifidobacterium breve	NRBB01	SAMN06827008	2014-10-01	Netherlands	Homo sapiens	1080	1	0	0	1.00
99	GCA_002838305.1	Bifidobacterium breve	NRBB11	SAMN06827081	2014-10-01	Netherlands	Homo sapiens	1081	1	0	0	1.00
100	GCA_030876985.1	Bifidobacterium breve	B6	SAMN34082179	-	-	Homo sapiens	1081	1	0	0	1.00