GCA_028307235.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaAIHJECGG_8 (original name was: gnl|Prokka|AIHJECGG_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	lanthipeptide-class-ii	1	18,921

gnlProkkaAIHJECGG_11 (original name was: gnl|Prokka|AIHJECGG_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	ranthipeptide	57,521	79,109

gnlProkkaAIHJECGG_69 (original name was: gnl|Prokka|AIHJECGG_69)

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	RRE-containing	130,745	146,290

gnlProkkaAIHJECGG_71 (original name was: gnl|Prokka|AIHJECGG_71)

Region	Type	From	To	Most similar known cluster		Similarity
Region 71.1	cyclic-lactone-autoinducer	43,255	63,960

Region	Type	From	To	Similarity
Region 8.1	lanthipeptide-class-ii	1	18,921
Region 11.1	ranthipeptide	57,521	79,109
Region 69.1	RRE-containing	130,745	146,290
Region 71.1	cyclic-lactone-autoinducer	43,255	63,960

No secondary metabolite regions were found in these records:: gnlProkkaAIHJECGG_1 (original name was: gnl|Prokka|AIHJECGG_1); gnlProkkaAIHJECGG_2 (original name was: gnl|Prokka|AIHJECGG_2); gnlProkkaAIHJECGG_3 (original name was: gnl|Prokka|AIHJECGG_3); gnlProkkaAIHJECGG_4 (original name was: gnl|Prokka|AIHJECGG_4); gnlProkkaAIHJECGG_5 (original name was: gnl|Prokka|AIHJECGG_5); gnlProkkaAIHJECGG_6 (original name was: gnl|Prokka|AIHJECGG_6); gnlProkkaAIHJECGG_7 (original name was: gnl|Prokka|AIHJECGG_7); gnlProkkaAIHJECGG_9 (original name was: gnl|Prokka|AIHJECGG_9); gnlProkkaAIHJECGG_10 (original name was: gnl|Prokka|AIHJECGG_10); gnlProkkaAIHJECGG_12 (original name was: gnl|Prokka|AIHJECGG_12); gnlProkkaAIHJECGG_13 (original name was: gnl|Prokka|AIHJECGG_13); gnlProkkaAIHJECGG_14 (original name was: gnl|Prokka|AIHJECGG_14); gnlProkkaAIHJECGG_15 (original name was: gnl|Prokka|AIHJECGG_15); gnlProkkaAIHJECGG_16 (original name was: gnl|Prokka|AIHJECGG_16); gnlProkkaAIHJECGG_17 (original name was: gnl|Prokka|AIHJECGG_17); gnlProkkaAIHJECGG_18 (original name was: gnl|Prokka|AIHJECGG_18); gnlProkkaAIHJECGG_19 (original name was: gnl|Prokka|AIHJECGG_19); gnlProkkaAIHJECGG_20 (original name was: gnl|Prokka|AIHJECGG_20); gnlProkkaAIHJECGG_21 (original name was: gnl|Prokka|AIHJECGG_21); gnlProkkaAIHJECGG_22 (original name was: gnl|Prokka|AIHJECGG_22); gnlProkkaAIHJECGG_23 (original name was: gnl|Prokka|AIHJECGG_23); gnlProkkaAIHJECGG_24 (original name was: gnl|Prokka|AIHJECGG_24); gnlProkkaAIHJECGG_25 (original name was: gnl|Prokka|AIHJECGG_25); gnlProkkaAIHJECGG_26 (original name was: gnl|Prokka|AIHJECGG_26); gnlProkkaAIHJECGG_27 (original name was: gnl|Prokka|AIHJECGG_27); gnlProkkaAIHJECGG_28 (original name was: gnl|Prokka|AIHJECGG_28); gnlProkkaAIHJECGG_29 (original name was: gnl|Prokka|AIHJECGG_29); gnlProkkaAIHJECGG_30 (original name was: gnl|Prokka|AIHJECGG_30); gnlProkkaAIHJECGG_31 (original name was: gnl|Prokka|AIHJECGG_31); gnlProkkaAIHJECGG_32 (original name was: gnl|Prokka|AIHJECGG_32); gnlProkkaAIHJECGG_33 (original name was: gnl|Prokka|AIHJECGG_33); gnlProkkaAIHJECGG_34 (original name was: gnl|Prokka|AIHJECGG_34); gnlProkkaAIHJECGG_35 (original name was: gnl|Prokka|AIHJECGG_35); gnlProkkaAIHJECGG_36 (original name was: gnl|Prokka|AIHJECGG_36); gnlProkkaAIHJECGG_37 (original name was: gnl|Prokka|AIHJECGG_37); gnlProkkaAIHJECGG_38 (original name was: gnl|Prokka|AIHJECGG_38); gnlProkkaAIHJECGG_39 (original name was: gnl|Prokka|AIHJECGG_39); gnlProkkaAIHJECGG_40 (original name was: gnl|Prokka|AIHJECGG_40); gnlProkkaAIHJECGG_41 (original name was: gnl|Prokka|AIHJECGG_41); gnlProkkaAIHJECGG_42 (original name was: gnl|Prokka|AIHJECGG_42); gnlProkkaAIHJECGG_43 (original name was: gnl|Prokka|AIHJECGG_43); gnlProkkaAIHJECGG_44 (original name was: gnl|Prokka|AIHJECGG_44); gnlProkkaAIHJECGG_45 (original name was: gnl|Prokka|AIHJECGG_45); gnlProkkaAIHJECGG_46 (original name was: gnl|Prokka|AIHJECGG_46); gnlProkkaAIHJECGG_47 (original name was: gnl|Prokka|AIHJECGG_47); gnlProkkaAIHJECGG_48 (original name was: gnl|Prokka|AIHJECGG_48); gnlProkkaAIHJECGG_49 (original name was: gnl|Prokka|AIHJECGG_49); gnlProkkaAIHJECGG_50 (original name was: gnl|Prokka|AIHJECGG_50); gnlProkkaAIHJECGG_51 (original name was: gnl|Prokka|AIHJECGG_51); gnlProkkaAIHJECGG_52 (original name was: gnl|Prokka|AIHJECGG_52); gnlProkkaAIHJECGG_53 (original name was: gnl|Prokka|AIHJECGG_53); gnlProkkaAIHJECGG_54 (original name was: gnl|Prokka|AIHJECGG_54); gnlProkkaAIHJECGG_55 (original name was: gnl|Prokka|AIHJECGG_55); gnlProkkaAIHJECGG_56 (original name was: gnl|Prokka|AIHJECGG_56); gnlProkkaAIHJECGG_57 (original name was: gnl|Prokka|AIHJECGG_57); gnlProkkaAIHJECGG_58 (original name was: gnl|Prokka|AIHJECGG_58); gnlProkkaAIHJECGG_59 (original name was: gnl|Prokka|AIHJECGG_59); gnlProkkaAIHJECGG_60 (original name was: gnl|Prokka|AIHJECGG_60); gnlProkkaAIHJECGG_61 (original name was: gnl|Prokka|AIHJECGG_61); gnlProkkaAIHJECGG_62 (original name was: gnl|Prokka|AIHJECGG_62); gnlProkkaAIHJECGG_63 (original name was: gnl|Prokka|AIHJECGG_63); gnlProkkaAIHJECGG_64 (original name was: gnl|Prokka|AIHJECGG_64); gnlProkkaAIHJECGG_65 (original name was: gnl|Prokka|AIHJECGG_65); gnlProkkaAIHJECGG_66 (original name was: gnl|Prokka|AIHJECGG_66); gnlProkkaAIHJECGG_67 (original name was: gnl|Prokka|AIHJECGG_67); gnlProkkaAIHJECGG_68 (original name was: gnl|Prokka|AIHJECGG_68); gnlProkkaAIHJECGG_70 (original name was: gnl|Prokka|AIHJECGG_70)

Compact view

gnlProkkaAIHJECGG_8 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 18,921 nt. (total: 18,921 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg8_9

ctg8_8

Leader:

MNEMNDKIIGNVEKELDEIEIIDTESIEEKLSFIVYG

Core:

TIVCC

Core with dehydrations:

DhbIVCysCys

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg8_8 - Class II: Cleavage pHMM score: -5.90; RODEO score: 0; Monoisotopic mass: 519.2 Da; Molecular weight: 519.7 Da; Number of bridges: 1

gnlProkkaAIHJECGG_11 - Region 1 - ranthipeptide

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Location: 57,521 - 79,109 nt. (total: 21,589 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAIHJECGG_69 - Region 1 - RRE-containing

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Location: 130,745 - 146,290 nt. (total: 15,546 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaAIHJECGG_71 - Region 1 - cyclic-lactone-autoinducer

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Location: 43,255 - 63,960 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.