GCA_028310765.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaOHHHLHLN_34 (original name was: gnl|Prokka|OHHHLHLN_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	lanthipeptide-class-ii	61,843	75,958

gnlProkkaOHHHLHLN_37 (original name was: gnl|Prokka|OHHHLHLN_37)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	ranthipeptide	12,825	34,413

gnlProkkaOHHHLHLN_40 (original name was: gnl|Prokka|OHHHLHLN_40)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	21,838	60,006	dipeptide aldehydes	NRP	47%

gnlProkkaOHHHLHLN_52 (original name was: gnl|Prokka|OHHHLHLN_52)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	cyclic-lactone-autoinducer	1	10,803

Region	Type	From	To	Most similar known cluster	Similarity
Region 34.1	lanthipeptide-class-ii	61,843	75,958
Region 37.1	ranthipeptide	12,825	34,413
Region 40.1	NRPS	21,838	60,006	dipeptide aldehydes	NRP	47%
Region 52.1	cyclic-lactone-autoinducer	1	10,803

No secondary metabolite regions were found in these records:: gnlProkkaOHHHLHLN_1 (original name was: gnl|Prokka|OHHHLHLN_1); gnlProkkaOHHHLHLN_2 (original name was: gnl|Prokka|OHHHLHLN_2); gnlProkkaOHHHLHLN_3 (original name was: gnl|Prokka|OHHHLHLN_3); gnlProkkaOHHHLHLN_4 (original name was: gnl|Prokka|OHHHLHLN_4); gnlProkkaOHHHLHLN_5 (original name was: gnl|Prokka|OHHHLHLN_5); gnlProkkaOHHHLHLN_6 (original name was: gnl|Prokka|OHHHLHLN_6); gnlProkkaOHHHLHLN_7 (original name was: gnl|Prokka|OHHHLHLN_7); gnlProkkaOHHHLHLN_8 (original name was: gnl|Prokka|OHHHLHLN_8); gnlProkkaOHHHLHLN_9 (original name was: gnl|Prokka|OHHHLHLN_9); gnlProkkaOHHHLHLN_10 (original name was: gnl|Prokka|OHHHLHLN_10); gnlProkkaOHHHLHLN_11 (original name was: gnl|Prokka|OHHHLHLN_11); gnlProkkaOHHHLHLN_12 (original name was: gnl|Prokka|OHHHLHLN_12); gnlProkkaOHHHLHLN_13 (original name was: gnl|Prokka|OHHHLHLN_13); gnlProkkaOHHHLHLN_14 (original name was: gnl|Prokka|OHHHLHLN_14); gnlProkkaOHHHLHLN_15 (original name was: gnl|Prokka|OHHHLHLN_15); gnlProkkaOHHHLHLN_16 (original name was: gnl|Prokka|OHHHLHLN_16); gnlProkkaOHHHLHLN_17 (original name was: gnl|Prokka|OHHHLHLN_17); gnlProkkaOHHHLHLN_18 (original name was: gnl|Prokka|OHHHLHLN_18); gnlProkkaOHHHLHLN_19 (original name was: gnl|Prokka|OHHHLHLN_19); gnlProkkaOHHHLHLN_20 (original name was: gnl|Prokka|OHHHLHLN_20); gnlProkkaOHHHLHLN_21 (original name was: gnl|Prokka|OHHHLHLN_21); gnlProkkaOHHHLHLN_22 (original name was: gnl|Prokka|OHHHLHLN_22); gnlProkkaOHHHLHLN_23 (original name was: gnl|Prokka|OHHHLHLN_23); gnlProkkaOHHHLHLN_24 (original name was: gnl|Prokka|OHHHLHLN_24); gnlProkkaOHHHLHLN_25 (original name was: gnl|Prokka|OHHHLHLN_25); gnlProkkaOHHHLHLN_26 (original name was: gnl|Prokka|OHHHLHLN_26); gnlProkkaOHHHLHLN_27 (original name was: gnl|Prokka|OHHHLHLN_27); gnlProkkaOHHHLHLN_28 (original name was: gnl|Prokka|OHHHLHLN_28); gnlProkkaOHHHLHLN_29 (original name was: gnl|Prokka|OHHHLHLN_29); gnlProkkaOHHHLHLN_30 (original name was: gnl|Prokka|OHHHLHLN_30); gnlProkkaOHHHLHLN_31 (original name was: gnl|Prokka|OHHHLHLN_31); gnlProkkaOHHHLHLN_32 (original name was: gnl|Prokka|OHHHLHLN_32); gnlProkkaOHHHLHLN_33 (original name was: gnl|Prokka|OHHHLHLN_33); gnlProkkaOHHHLHLN_35 (original name was: gnl|Prokka|OHHHLHLN_35); gnlProkkaOHHHLHLN_36 (original name was: gnl|Prokka|OHHHLHLN_36); gnlProkkaOHHHLHLN_38 (original name was: gnl|Prokka|OHHHLHLN_38); gnlProkkaOHHHLHLN_39 (original name was: gnl|Prokka|OHHHLHLN_39); gnlProkkaOHHHLHLN_41 (original name was: gnl|Prokka|OHHHLHLN_41); gnlProkkaOHHHLHLN_42 (original name was: gnl|Prokka|OHHHLHLN_42); gnlProkkaOHHHLHLN_43 (original name was: gnl|Prokka|OHHHLHLN_43); gnlProkkaOHHHLHLN_44 (original name was: gnl|Prokka|OHHHLHLN_44); gnlProkkaOHHHLHLN_45 (original name was: gnl|Prokka|OHHHLHLN_45); gnlProkkaOHHHLHLN_46 (original name was: gnl|Prokka|OHHHLHLN_46); gnlProkkaOHHHLHLN_47 (original name was: gnl|Prokka|OHHHLHLN_47); gnlProkkaOHHHLHLN_48 (original name was: gnl|Prokka|OHHHLHLN_48); gnlProkkaOHHHLHLN_49 (original name was: gnl|Prokka|OHHHLHLN_49); gnlProkkaOHHHLHLN_50 (original name was: gnl|Prokka|OHHHLHLN_50); gnlProkkaOHHHLHLN_51 (original name was: gnl|Prokka|OHHHLHLN_51); gnlProkkaOHHHLHLN_53 (original name was: gnl|Prokka|OHHHLHLN_53); gnlProkkaOHHHLHLN_54 (original name was: gnl|Prokka|OHHHLHLN_54); gnlProkkaOHHHLHLN_55 (original name was: gnl|Prokka|OHHHLHLN_55); gnlProkkaOHHHLHLN_56 (original name was: gnl|Prokka|OHHHLHLN_56); gnlProkkaOHHHLHLN_57 (original name was: gnl|Prokka|OHHHLHLN_57); gnlProkkaOHHHLHLN_58 (original name was: gnl|Prokka|OHHHLHLN_58); gnlProkkaOHHHLHLN_59 (original name was: gnl|Prokka|OHHHLHLN_59); gnlProkkaOHHHLHLN_60 (original name was: gnl|Prokka|OHHHLHLN_60); gnlProkkaOHHHLHLN_61 (original name was: gnl|Prokka|OHHHLHLN_61); gnlProkkaOHHHLHLN_62 (original name was: gnl|Prokka|OHHHLHLN_62); gnlProkkaOHHHLHLN_63 (original name was: gnl|Prokka|OHHHLHLN_63); gnlProkkaOHHHLHLN_64 (original name was: gnl|Prokka|OHHHLHLN_64); gnlProkkaOHHHLHLN_65 (original name was: gnl|Prokka|OHHHLHLN_65); gnlProkkaOHHHLHLN_66 (original name was: gnl|Prokka|OHHHLHLN_66); gnlProkkaOHHHLHLN_67 (original name was: gnl|Prokka|OHHHLHLN_67); gnlProkkaOHHHLHLN_68 (original name was: gnl|Prokka|OHHHLHLN_68); gnlProkkaOHHHLHLN_69 (original name was: gnl|Prokka|OHHHLHLN_69); gnlProkkaOHHHLHLN_70 (original name was: gnl|Prokka|OHHHLHLN_70); gnlProkkaOHHHLHLN_71 (original name was: gnl|Prokka|OHHHLHLN_71); gnlProkkaOHHHLHLN_72 (original name was: gnl|Prokka|OHHHLHLN_72); gnlProkkaOHHHLHLN_73 (original name was: gnl|Prokka|OHHHLHLN_73); gnlProkkaOHHHLHLN_74 (original name was: gnl|Prokka|OHHHLHLN_74); gnlProkkaOHHHLHLN_75 (original name was: gnl|Prokka|OHHHLHLN_75); gnlProkkaOHHHLHLN_76 (original name was: gnl|Prokka|OHHHLHLN_76); gnlProkkaOHHHLHLN_77 (original name was: gnl|Prokka|OHHHLHLN_77); gnlProkkaOHHHLHLN_78 (original name was: gnl|Prokka|OHHHLHLN_78); gnlProkkaOHHHLHLN_79 (original name was: gnl|Prokka|OHHHLHLN_79); gnlProkkaOHHHLHLN_80 (original name was: gnl|Prokka|OHHHLHLN_80); gnlProkkaOHHHLHLN_81 (original name was: gnl|Prokka|OHHHLHLN_81); gnlProkkaOHHHLHLN_82 (original name was: gnl|Prokka|OHHHLHLN_82); gnlProkkaOHHHLHLN_83 (original name was: gnl|Prokka|OHHHLHLN_83); gnlProkkaOHHHLHLN_84 (original name was: gnl|Prokka|OHHHLHLN_84); gnlProkkaOHHHLHLN_85 (original name was: gnl|Prokka|OHHHLHLN_85); gnlProkkaOHHHLHLN_86 (original name was: gnl|Prokka|OHHHLHLN_86); gnlProkkaOHHHLHLN_87 (original name was: gnl|Prokka|OHHHLHLN_87); gnlProkkaOHHHLHLN_88 (original name was: gnl|Prokka|OHHHLHLN_88); gnlProkkaOHHHLHLN_89 (original name was: gnl|Prokka|OHHHLHLN_89); gnlProkkaOHHHLHLN_90 (original name was: gnl|Prokka|OHHHLHLN_90); gnlProkkaOHHHLHLN_91 (original name was: gnl|Prokka|OHHHLHLN_91); gnlProkkaOHHHLHLN_92 (original name was: gnl|Prokka|OHHHLHLN_92); gnlProkkaOHHHLHLN_93 (original name was: gnl|Prokka|OHHHLHLN_93); gnlProkkaOHHHLHLN_94 (original name was: gnl|Prokka|OHHHLHLN_94); gnlProkkaOHHHLHLN_95 (original name was: gnl|Prokka|OHHHLHLN_95); gnlProkkaOHHHLHLN_96 (original name was: gnl|Prokka|OHHHLHLN_96); gnlProkkaOHHHLHLN_97 (original name was: gnl|Prokka|OHHHLHLN_97); gnlProkkaOHHHLHLN_98 (original name was: gnl|Prokka|OHHHLHLN_98); gnlProkkaOHHHLHLN_99 (original name was: gnl|Prokka|OHHHLHLN_99); gnlProkkaOHHHLHLN_100 (original name was: gnl|Prokka|OHHHLHLN_100); gnlProkkaOHHHLHLN_101 (original name was: gnl|Prokka|OHHHLHLN_101); gnlProkkaOHHHLHLN_102 (original name was: gnl|Prokka|OHHHLHLN_102); gnlProkkaOHHHLHLN_103 (original name was: gnl|Prokka|OHHHLHLN_103); gnlProkkaOHHHLHLN_104 (original name was: gnl|Prokka|OHHHLHLN_104); gnlProkkaOHHHLHLN_105 (original name was: gnl|Prokka|OHHHLHLN_105); gnlProkkaOHHHLHLN_106 (original name was: gnl|Prokka|OHHHLHLN_106); gnlProkkaOHHHLHLN_107 (original name was: gnl|Prokka|OHHHLHLN_107); gnlProkkaOHHHLHLN_108 (original name was: gnl|Prokka|OHHHLHLN_108); gnlProkkaOHHHLHLN_109 (original name was: gnl|Prokka|OHHHLHLN_109); gnlProkkaOHHHLHLN_110 (original name was: gnl|Prokka|OHHHLHLN_110); gnlProkkaOHHHLHLN_111 (original name was: gnl|Prokka|OHHHLHLN_111); gnlProkkaOHHHLHLN_112 (original name was: gnl|Prokka|OHHHLHLN_112); gnlProkkaOHHHLHLN_113 (original name was: gnl|Prokka|OHHHLHLN_113); gnlProkkaOHHHLHLN_114 (original name was: gnl|Prokka|OHHHLHLN_114); gnlProkkaOHHHLHLN_115 (original name was: gnl|Prokka|OHHHLHLN_115); gnlProkkaOHHHLHLN_116 (original name was: gnl|Prokka|OHHHLHLN_116)

Compact view

gnlProkkaOHHHLHLN_34 - Region 1 - lanthipeptide-class-ii

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Location: 61,843 - 75,958 nt. (total: 14,116 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaOHHHLHLN_37 - Region 1 - ranthipeptide

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Location: 12,825 - 34,413 nt. (total: 21,589 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOHHHLHLN_40 - Region 1 - NRPS

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Location: 21,838 - 60,006 nt. (total: 38,169 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 21837 - 60006:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg40_45

AMP-binding (20..419): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLTDGGISK
Nearest Stachelhaus code(s):: Leu or Trp DVLTDGGISK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (1033..1421): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAMFSGAIFK
Nearest Stachelhaus code(s):: Leu or Trp DAMFSGAIFK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (2027..2418): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAITTGGVSK
Nearest Stachelhaus code(s):: Leu or Trp DAITTGGVSK (97% 8Å match)
Stachelhaus code match:: 100% (strong)

gnlProkkaOHHHLHLN_52 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 10,803 nt. (total: 10,803 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.