GCA_028325525.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFPGGHJAJ_2 (original name was: gnl|Prokka|FPGGHJAJ_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	lassopeptide	191	14,040

gnlProkkaFPGGHJAJ_12 (original name was: gnl|Prokka|FPGGHJAJ_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	109,931	132,717

gnlProkkaFPGGHJAJ_14 (original name was: gnl|Prokka|FPGGHJAJ_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RiPP-like	128,588	140,684

gnlProkkaFPGGHJAJ_18 (original name was: gnl|Prokka|FPGGHJAJ_18)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	T3PKS	35,505	73,807

Region	Type	From	To	Similarity
Region 2.1	lassopeptide	191	14,040
Region 12.1	RiPP-like	109,931	132,717
Region 14.1	RiPP-like	128,588	140,684
Region 18.1	T3PKS	35,505	73,807

Compact view

gnlProkkaFPGGHJAJ_2 - Region 1 - lassopeptide

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Location: 191 - 14,040 nt. (total: 13,850 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lasso peptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

gnlProkkaFPGGHJAJ_12 - Region 1 - RiPP-like

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Location: 109,931 - 132,717 nt. (total: 22,787 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFPGGHJAJ_14 - Region 1 - RiPP-like

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Location: 128,588 - 140,684 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFPGGHJAJ_18 - Region 1 - T3PKS

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Location: 35,505 - 73,807 nt. (total: 38,303 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.