GCA_028325775.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDKPPGJCD_11 (original name was: gnl|Prokka|DKPPGJCD_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	T3PKS	234,240	275,406

gnlProkkaDKPPGJCD_17 (original name was: gnl|Prokka|DKPPGJCD_17)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RiPP-like	113,663	132,512

gnlProkkaDKPPGJCD_19 (original name was: gnl|Prokka|DKPPGJCD_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RiPP-like	73,769	85,865	quinolidomicin A	Polyketide	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 11.1	T3PKS	234,240	275,406
Region 17.1	RiPP-like	113,663	132,512
Region 19.1	RiPP-like	73,769	85,865	quinolidomicin A	Polyketide	3%

No secondary metabolite regions were found in these records:: gnlProkkaDKPPGJCD_1 (original name was: gnl|Prokka|DKPPGJCD_1); gnlProkkaDKPPGJCD_2 (original name was: gnl|Prokka|DKPPGJCD_2); gnlProkkaDKPPGJCD_3 (original name was: gnl|Prokka|DKPPGJCD_3); gnlProkkaDKPPGJCD_4 (original name was: gnl|Prokka|DKPPGJCD_4); gnlProkkaDKPPGJCD_5 (original name was: gnl|Prokka|DKPPGJCD_5); gnlProkkaDKPPGJCD_6 (original name was: gnl|Prokka|DKPPGJCD_6); gnlProkkaDKPPGJCD_7 (original name was: gnl|Prokka|DKPPGJCD_7); gnlProkkaDKPPGJCD_8 (original name was: gnl|Prokka|DKPPGJCD_8); gnlProkkaDKPPGJCD_9 (original name was: gnl|Prokka|DKPPGJCD_9); gnlProkkaDKPPGJCD_10 (original name was: gnl|Prokka|DKPPGJCD_10); gnlProkkaDKPPGJCD_12 (original name was: gnl|Prokka|DKPPGJCD_12); gnlProkkaDKPPGJCD_13 (original name was: gnl|Prokka|DKPPGJCD_13); gnlProkkaDKPPGJCD_14 (original name was: gnl|Prokka|DKPPGJCD_14); gnlProkkaDKPPGJCD_15 (original name was: gnl|Prokka|DKPPGJCD_15); gnlProkkaDKPPGJCD_16 (original name was: gnl|Prokka|DKPPGJCD_16); gnlProkkaDKPPGJCD_18 (original name was: gnl|Prokka|DKPPGJCD_18); gnlProkkaDKPPGJCD_20 (original name was: gnl|Prokka|DKPPGJCD_20); gnlProkkaDKPPGJCD_21 (original name was: gnl|Prokka|DKPPGJCD_21); gnlProkkaDKPPGJCD_22 (original name was: gnl|Prokka|DKPPGJCD_22); gnlProkkaDKPPGJCD_23 (original name was: gnl|Prokka|DKPPGJCD_23); gnlProkkaDKPPGJCD_24 (original name was: gnl|Prokka|DKPPGJCD_24)

Compact view

gnlProkkaDKPPGJCD_11 - Region 1 - T3PKS

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Location: 234,240 - 275,406 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDKPPGJCD_17 - Region 1 - RiPP-like

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Location: 113,663 - 132,512 nt. (total: 18,850 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDKPPGJCD_19 - Region 1 - RiPP-like

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Location: 73,769 - 85,865 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1